Detailed information NTG0698154

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP12_RS28285
• Genome accession: NZ_CP115242
• Coordinates: 6044231..6045235 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F044
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6039231..6050235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP12_RS28270 (PCP12_28245)	-	6039714..6040721 (+)	1008	WP_003092265.1	TolB family protein	-
PCP12_RS28275 (PCP12_28250)	mutS	6040847..6043414 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP12_RS28280 (PCP12_28255)	fdxA	6043481..6043804 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP12_RS28285 (PCP12_28260)	rpoS	6044231..6045235 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP12_RS28290 (PCP12_28265)	-	6045340..6046233 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP12_RS28295 (PCP12_28270)	-	6046279..6046914 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP12_RS28300 (PCP12_28275)	surE	6046947..6047696 (-)	750	WP_073660043.1	5'/3'-nucleotidase SurE	-
PCP12_RS28305 (PCP12_28280)	truD	6047684..6048751 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PCP12_RS28310 (PCP12_28285)	ispF	6048748..6049221 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP12_RS28315 (PCP12_28290)	fghA	6049292..6050143 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=698154 PCP12_RS28285 WP_003113871.1 6044231..6045235(-) (rpoS) [Pseudomonas aeruginosa strain F044]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=698154 PCP12_RS28285 WP_003113871.1 6044231..6045235(-) (rpoS) [Pseudomonas aeruginosa strain F044]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653