Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NFI81_RS14520 Genome accession   NZ_CP098806
Coordinates   3489311..3490684 (-) Length   457 a.a.
NCBI ID   WP_234611735.1    Uniprot ID   A0A9X1P8U8
Organism   Dyadobacter fanqingshengii strain CY399     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3484311..3495684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFI81_RS14495 (NFI81_14485) ychF 3484862..3485962 (-) 1101 WP_234611739.1 redox-regulated ATPase YchF -
  NFI81_RS14500 (NFI81_14490) - 3486123..3486470 (-) 348 WP_082213641.1 DUF3276 family protein -
  NFI81_RS14505 (NFI81_14495) - 3486708..3487160 (+) 453 WP_234611738.1 septal ring lytic transglycosylase RlpA family protein -
  NFI81_RS14510 (NFI81_14500) - 3487173..3488087 (+) 915 WP_234611737.1 DUF58 domain-containing protein -
  NFI81_RS14515 (NFI81_14505) - 3488138..3489286 (+) 1149 WP_234611736.1 hypothetical protein -
  NFI81_RS14520 (NFI81_14510) radA 3489311..3490684 (-) 1374 WP_234611735.1 DNA repair protein RadA Machinery gene
  NFI81_RS14525 (NFI81_14515) - 3490852..3491571 (+) 720 WP_234611734.1 porin family protein -
  NFI81_RS14530 (NFI81_14520) - 3491751..3492149 (-) 399 WP_234611733.1 LytTR family DNA-binding domain-containing protein -
  NFI81_RS14535 (NFI81_14525) pheS 3492482..3493522 (+) 1041 WP_234611732.1 phenylalanine--tRNA ligase subunit alpha -
  NFI81_RS14540 (NFI81_14530) - 3493606..3494340 (-) 735 WP_234611731.1 esterase family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50595.11 Da        Isoelectric Point: 6.3721

>NTDB_id=698119 NFI81_RS14520 WP_234611735.1 3489311..3490684(-) (radA) [Dyadobacter fanqingshengii strain CY399]
MAKAKTAYFCQECGYNSPKWVGRCPSCGEWNTFVQEVIEKEDKKTAVAWKGVNLASRPRAIAQIEYQNEPRITTFDGELN
RVLGGGIVQGSLVLIGGEPGIGKSTLMLQIALTLSNKKVLYVSGEESDQQIKMRAERMDSKSDNCFILTETHTQNIFRQI
EDFQPEILIIDSIQTMQSTYIESGAGSVSQVRECTAEFMKYAKEMGVPVFLIGHITKDGSLAGPKVLEHMVDTVLQFEGD
RHNTYRILRTVKNRFGSTSELGIYEMHGSGLRQVSNPSEILISQRDEPVSGIAIGSMMEGNRPLLIEIQSLVSVANYGTP
QRSSTGFDGKRLQMLLAVLEKRGGFRLGVQDVFLNVAGGLKVEDPAIDLAVIASIVSSYEDKFIPPSVCFAAEVGLGGEV
RAVNRIENRIFEAEKLGFKKVYISKYNSRGLDLKKFRIEVISVASLDELFMSLFLNT

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=698119 NFI81_RS14520 WP_234611735.1 3489311..3490684(-) (radA) [Dyadobacter fanqingshengii strain CY399]
ATGGCCAAAGCCAAGACAGCCTATTTTTGTCAGGAATGTGGGTATAATTCACCCAAATGGGTGGGTCGGTGCCCCTCGTG
CGGAGAATGGAATACTTTTGTTCAGGAAGTTATTGAAAAAGAAGATAAAAAGACGGCGGTTGCCTGGAAAGGCGTTAATC
TGGCCAGCAGGCCGCGAGCAATTGCCCAAATAGAATATCAGAATGAGCCCAGGATCACCACATTCGATGGAGAGCTCAAT
CGGGTGCTGGGAGGCGGAATTGTGCAGGGTTCGCTGGTTTTAATCGGTGGAGAGCCAGGCATCGGGAAGTCTACATTGAT
GCTGCAAATTGCGCTTACGCTCTCCAATAAAAAAGTTCTTTACGTTTCGGGAGAAGAATCCGATCAGCAGATTAAGATGC
GGGCGGAACGGATGGATTCCAAGAGCGACAACTGCTTTATCCTTACCGAAACGCATACCCAAAATATCTTCCGGCAAATT
GAAGACTTCCAACCCGAAATCCTGATTATTGATTCGATCCAAACCATGCAATCGACTTACATTGAGTCGGGTGCAGGCAG
CGTGTCGCAGGTGAGGGAATGTACGGCTGAATTCATGAAATATGCCAAGGAAATGGGCGTTCCCGTTTTTCTGATCGGGC
ACATTACCAAAGACGGTTCGCTGGCAGGTCCGAAAGTGCTGGAACATATGGTGGACACGGTTTTGCAATTTGAGGGAGAC
CGTCATAACACCTATCGCATTCTCAGGACCGTAAAAAACCGCTTTGGAAGCACATCAGAACTGGGTATTTACGAAATGCA
TGGTTCCGGTTTGCGGCAAGTTAGTAACCCGTCCGAAATCCTCATTTCCCAACGTGACGAACCTGTAAGCGGCATTGCCA
TAGGCTCCATGATGGAAGGAAACAGGCCGTTGTTGATTGAAATACAATCGCTTGTGAGTGTTGCCAATTATGGGACACCG
CAGCGCAGTAGCACCGGTTTTGATGGAAAGCGACTTCAAATGTTGCTGGCCGTTCTGGAAAAGCGAGGCGGATTTCGATT
AGGTGTTCAGGATGTATTTTTGAATGTGGCCGGTGGATTAAAAGTGGAAGATCCTGCCATTGACCTGGCCGTCATTGCCT
CCATTGTTTCGTCTTATGAAGACAAATTTATCCCGCCATCGGTCTGTTTTGCCGCGGAAGTGGGGCTTGGGGGCGAAGTA
AGAGCTGTGAACAGGATAGAAAACAGGATTTTTGAGGCGGAAAAGTTGGGTTTCAAAAAAGTTTACATTTCGAAATATAA
CAGCAGAGGCTTGGATTTGAAGAAATTCAGAATTGAGGTCATCTCTGTTGCAAGCCTGGATGAGCTCTTTATGTCCCTAT
TTCTTAACACATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.659

98.687

0.53
  radA Streptococcus pneumoniae Rx1

52.308

99.562

0.521
  radA Streptococcus pneumoniae D39

52.308

99.562

0.521
  radA Streptococcus pneumoniae R6

52.308

99.562

0.521
  radA Streptococcus pneumoniae TIGR4

52.308

99.562

0.521
  radA Streptococcus mitis NCTC 12261

52.088

99.562

0.519
  radA Streptococcus mitis SK321

51.868

99.562

0.516