Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NFI80_RS13345 Genome accession   NZ_CP098805
Coordinates   3229294..3230667 (-) Length   457 a.a.
NCBI ID   WP_082213645.1    Uniprot ID   -
Organism   Dyadobacter chenhuakuii strain CY22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3224294..3235667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFI80_RS13320 (NFI80_13320) ychF 3224847..3225947 (-) 1101 WP_026630756.1 redox-regulated ATPase YchF -
  NFI80_RS13325 (NFI80_13325) - 3226106..3226453 (-) 348 WP_255703254.1 DUF3276 family protein -
  NFI80_RS13330 (NFI80_13330) - 3226693..3227145 (+) 453 WP_235162759.1 septal ring lytic transglycosylase RlpA family protein -
  NFI80_RS13335 (NFI80_13335) - 3227158..3228072 (+) 915 WP_233795509.1 DUF58 domain-containing protein -
  NFI80_RS13340 (NFI80_13340) - 3228121..3229269 (+) 1149 WP_235162758.1 hypothetical protein -
  NFI80_RS13345 (NFI80_13345) radA 3229294..3230667 (-) 1374 WP_082213645.1 DNA repair protein RadA Machinery gene
  NFI80_RS13350 (NFI80_13350) - 3230835..3231554 (+) 720 WP_235157898.1 porin family protein -
  NFI80_RS13355 (NFI80_13355) - 3231700..3232098 (-) 399 WP_233795505.1 LytTR family DNA-binding domain-containing protein -
  NFI80_RS13360 (NFI80_13360) pheS 3232397..3233437 (+) 1041 WP_235157894.1 phenylalanine--tRNA ligase subunit alpha -
  NFI80_RS13365 (NFI80_13365) - 3233511..3234242 (-) 732 WP_235157873.1 esterase family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50569.06 Da        Isoelectric Point: 6.1001

>NTDB_id=698109 NFI80_RS13345 WP_082213645.1 3229294..3230667(-) (radA) [Dyadobacter chenhuakuii strain CY22]
MAKAKTAYFCQECGYNSPKWVGRCPSCGEWNTFVQEVIEKEDKKTAVAWKGVNLASRPRSIAEIEYQNEPRITTFDGELN
RVLGGGIVQGSLVLIGGEPGIGKSTLMLQIALTLSNKKVLYVSGEESDQQIKMRAERMDSKSDNCFILTETHTQNIFRQI
EDFQPEILIIDSIQTMQSTYIESGAGSVSQVRECTAEFMKYAKEMGVPVFLIGHITKDGSLAGPKVLEHMVDTVLQFEGD
RHNTYRILRTVKNRFGSTSELGIYEMHGSGLRQVSNPSEILISQRDEPVSGIAIGSMMEGNRPLLIEIQSLVSVANYGTP
QRSSTGFDGKRLQMLLAVLEKRGGFRLGVQDVFLNVAGGLKVEDPAIDLAVIASIVSSYEDKFIPPSVCFAAEVGLGGEV
RAVSRIENRIFEAEKLGFKKVYISKYNSRGLDLKKFRIEVIAVASLDELFMSLFLNT

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=698109 NFI80_RS13345 WP_082213645.1 3229294..3230667(-) (radA) [Dyadobacter chenhuakuii strain CY22]
ATGGCCAAAGCCAAGACAGCTTATTTTTGTCAGGAATGTGGGTATAATTCACCCAAATGGGTGGGTCGCTGCCCGTCGTG
CGGCGAATGGAATACTTTTGTTCAGGAAGTTATTGAAAAAGAAGATAAGAAGACCGCAGTTGCCTGGAAAGGTGTCAATC
TGGCCAGCAGGCCGCGTTCTATTGCTGAAATTGAATACCAGAACGAGCCGAGGATCACAACATTTGACGGAGAACTCAAC
CGCGTGCTGGGAGGCGGGATTGTACAAGGTTCGCTGGTTCTGATCGGTGGCGAGCCGGGAATCGGGAAGTCAACATTAAT
GCTGCAAATTGCACTTACGCTGTCCAATAAGAAGGTTTTATACGTTTCAGGAGAGGAATCCGATCAGCAGATCAAGATGC
GGGCGGAGCGGATGGATTCTAAAAGCGACAATTGCTTCATTCTCACCGAAACGCATACGCAAAATATTTTCCGGCAAATA
GAAGATTTCCAACCCGAGATCCTGATCATCGACTCCATCCAGACGATGCAATCCACTTACATTGAGTCGGGCGCAGGCAG
CGTTTCGCAAGTGAGGGAATGTACGGCCGAATTTATGAAATACGCCAAAGAAATGGGCGTCCCGGTTTTTCTTATTGGCC
ACATTACCAAAGATGGTTCGCTGGCAGGGCCGAAAGTGCTGGAACATATGGTGGACACCGTTTTGCAGTTCGAGGGCGAT
CGCCACAACACCTATCGCATTCTCAGAACCGTAAAGAACCGCTTTGGAAGCACTTCTGAACTTGGTATTTACGAAATGCA
CGGTTCCGGTCTGCGGCAAGTTAGTAACCCATCCGAAATTCTTATTTCACAGCGCGACGAGCCGGTAAGCGGCATTGCCA
TAGGCTCCATGATGGAAGGTAACCGACCATTATTGATTGAAATACAATCCCTTGTAAGCGTCGCCAATTATGGAACGCCC
CAACGAAGCAGCACAGGATTTGACGGAAAACGGCTTCAAATGCTGCTCGCAGTTCTGGAAAAGCGGGGCGGTTTTCGGTT
AGGCGTCCAGGATGTTTTTTTAAATGTGGCTGGCGGATTAAAAGTGGAAGATCCTGCGATTGACCTGGCTGTGATCGCTT
CCATTGTTTCTTCCTATGAAGACAAATTCATCCCGCCGTCAGTTTGTTTCGCGGCGGAAGTAGGGCTTGGGGGAGAAGTG
AGGGCAGTCAGCAGGATCGAAAACCGAATTTTTGAGGCTGAAAAATTGGGTTTCAAAAAAGTTTACATTTCCAAATACAA
CAGCAGAGGATTGGACTTGAAAAAATTCAGGATCGAAGTCATAGCGGTTGCGAGCCTCGACGAGCTATTTATGTCGCTCT
TTTTAAATACTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.88

98.687

0.532
  radA Streptococcus pneumoniae Rx1

52.308

99.562

0.521
  radA Streptococcus pneumoniae D39

52.308

99.562

0.521
  radA Streptococcus pneumoniae R6

52.308

99.562

0.521
  radA Streptococcus pneumoniae TIGR4

52.308

99.562

0.521
  radA Streptococcus mitis NCTC 12261

52.088

99.562

0.519
  radA Streptococcus mitis SK321

51.868

99.562

0.516