Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NE424_RS12245 Genome accession   NZ_CP098795
Coordinates   2525645..2525971 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain VB280821     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2520645..2530971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE424_RS12225 (NE424_12225) - 2520746..2521375 (-) 630 WP_000219964.1 FHA domain-containing protein -
  NE424_RS12230 (NE424_12230) gspD 2521416..2523692 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  NE424_RS12235 (NE424_12235) - 2523734..2524570 (-) 837 WP_000870031.1 type II secretion system protein N -
  NE424_RS12240 (NE424_12240) gspN 2524570..2525313 (-) 744 WP_000730343.1 type II secretion system protein N -
  NE424_RS12245 (NE424_12245) hns 2525645..2525971 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  NE424_RS12250 (NE424_12250) - 2526166..2526606 (-) 441 WP_000661569.1 thioesterase family protein -
  NE424_RS12255 (NE424_12255) - 2526614..2527807 (-) 1194 WP_000681773.1 hypothetical protein -
  NE424_RS12260 (NE424_12260) - 2527817..2528656 (-) 840 WP_001230196.1 hypothetical protein -
  NE424_RS12265 (NE424_12265) - 2528665..2529432 (-) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  NE424_RS12270 (NE424_12270) hemC 2529437..2530354 (-) 918 WP_031956197.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=698068 NE424_RS12245 WP_000801427.1 2525645..2525971(-) (hns) [Acinetobacter baumannii strain VB280821]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=698068 NE424_RS12245 WP_000801427.1 2525645..2525971(-) (hns) [Acinetobacter baumannii strain VB280821]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1