Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NE421_RS08870 Genome accession   NZ_CP098791
Coordinates   1848795..1849175 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 280820     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1843795..1854175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE421_RS08840 (NE421_08840) kdsB 1844698..1845459 (+) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NE421_RS08845 (NE421_08845) - 1845471..1846451 (+) 981 WP_252172179.1 DNA polymerase III subunit delta' -
  NE421_RS08850 (NE421_08850) - 1846463..1846804 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  NE421_RS08855 (NE421_08855) - 1846822..1847595 (+) 774 WP_000497303.1 TatD family hydrolase -
  NE421_RS08860 (NE421_08860) - 1847633..1848241 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  NE421_RS08865 (NE421_08865) - 1848251..1848805 (+) 555 WP_000841373.1 type II secretion system protein -
  NE421_RS08870 (NE421_08870) xcpV 1848795..1849175 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  NE421_RS08875 (NE421_08875) xcpW 1849175..1849876 (+) 702 WP_000594576.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NE421_RS08880 (NE421_08880) gspK 1849876..1850835 (+) 960 WP_000301464.1 type II secretion system minor pseudopilin GspK -
  NE421_RS08885 (NE421_08885) - 1851065..1851661 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  NE421_RS08890 (NE421_08890) ung 1851712..1852425 (+) 714 WP_001177530.1 uracil-DNA glycosylase -
  NE421_RS08895 (NE421_08895) - 1852422..1853546 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  NE421_RS08900 (NE421_08900) tadA 1853553..1854056 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=698026 NE421_RS08870 WP_000836911.1 1848795..1849175(+) (xcpV) [Acinetobacter baumannii strain 280820]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=698026 NE421_RS08870 WP_000836911.1 1848795..1849175(+) (xcpV) [Acinetobacter baumannii strain 280820]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1