Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ND013_RS07815 Genome accession   NZ_CP098778
Coordinates   1659668..1660294 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain YQ13422hy     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654668..1665294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND013_RS07795 - 1655067..1656827 (-) 1761 WP_017384808.1 Lon protease family protein -
  ND013_RS07800 matP 1657014..1657466 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  ND013_RS07805 ompA 1657532..1658584 (-) 1053 WP_017694761.1 porin OmpA -
  ND013_RS07810 sulA 1658941..1659450 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  ND013_RS07815 sxy/tfoX 1659668..1660294 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  ND013_RS07820 yccS 1660251..1662413 (-) 2163 WP_040117460.1 YccS family putative transporter -
  ND013_RS07825 - 1662432..1662878 (-) 447 WP_003858149.1 YccF domain-containing protein -
  ND013_RS07830 helD 1663001..1665055 (+) 2055 WP_040118286.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=697904 ND013_RS07815 WP_017384804.1 1659668..1660294(+) (sxy/tfoX) [Enterobacter hormaechei strain YQ13422hy]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=697904 ND013_RS07815 WP_017384804.1 1659668..1660294(+) (sxy/tfoX) [Enterobacter hormaechei strain YQ13422hy]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572