Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NDX50_RS17650 Genome accession   NZ_CP098757
Coordinates   3746562..3747185 (+) Length   207 a.a.
NCBI ID   WP_064396848.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain AHC-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3741562..3752185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDX50_RS17630 (NDX50_17615) - 3741661..3743418 (-) 1758 WP_004111904.1 Lon protease family protein -
  NDX50_RS17635 (NDX50_17620) matP 3743604..3744056 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  NDX50_RS17640 (NDX50_17625) ompA 3744167..3745237 (-) 1071 WP_004100770.1 porin OmpA -
  NDX50_RS17645 (NDX50_17630) sulA 3745591..3746100 (-) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  NDX50_RS17650 (NDX50_17635) sxy/tfoX 3746562..3747185 (+) 624 WP_064396848.1 TfoX/Sxy family DNA transformation protein Regulator
  NDX50_RS17655 (NDX50_17640) yccS 3747173..3749308 (-) 2136 WP_064396706.1 YccS family putative transporter -
  NDX50_RS17660 (NDX50_17645) - 3749326..3749772 (-) 447 WP_004100782.1 YccF domain-containing protein -
  NDX50_RS17665 (NDX50_17650) helD 3749895..3751949 (+) 2055 WP_064396708.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23689.65 Da        Isoelectric Point: 10.0081

>NTDB_id=697766 NDX50_RS17650 WP_064396848.1 3746562..3747185(+) (sxy/tfoX) [Klebsiella oxytoca strain AHC-6]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSEMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=697766 NDX50_RS17650 WP_064396848.1 3746562..3747185(+) (sxy/tfoX) [Klebsiella oxytoca strain AHC-6]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCGAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493