Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NDK47_RS15765 Genome accession   NZ_CP098755
Coordinates   3194715..3196439 (-) Length   574 a.a.
NCBI ID   WP_251870712.1    Uniprot ID   -
Organism   Brevibacillus ruminantium strain BB3-R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3189715..3201439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK47_RS15745 (NDK47_15745) - 3190585..3191382 (-) 798 WP_322112062.1 metallophosphoesterase -
  NDK47_RS15750 (NDK47_15750) - 3191441..3192019 (-) 579 WP_251870709.1 carbonic anhydrase -
  NDK47_RS15755 (NDK47_15755) spo0A 3192196..3192984 (-) 789 WP_251870710.1 sporulation transcription factor Spo0A -
  NDK47_RS15760 (NDK47_15760) spoIVB 3193231..3194565 (-) 1335 WP_251870711.1 SpoIVB peptidase -
  NDK47_RS15765 (NDK47_15765) recN 3194715..3196439 (-) 1725 WP_251870712.1 DNA repair protein RecN Machinery gene
  NDK47_RS15770 (NDK47_15770) ahrC 3196457..3196906 (-) 450 WP_251870713.1 transcriptional regulator AhrC/ArgR -
  NDK47_RS15775 (NDK47_15775) - 3196911..3197768 (-) 858 WP_251876193.1 NAD(+)/NADH kinase -
  NDK47_RS15780 (NDK47_15780) - 3197893..3198705 (-) 813 WP_251870714.1 TlyA family RNA methyltransferase -
  NDK47_RS15785 (NDK47_15785) dxs 3198702..3200585 (-) 1884 WP_251870715.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64767.96 Da        Isoelectric Point: 4.9363

>NTDB_id=697727 NDK47_RS15765 WP_251870712.1 3194715..3196439(-) (recN) [Brevibacillus ruminantium strain BB3-R1]
MLLELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASTDFVRYGETRAEVEGLFELPPGHPAFSVC
ENFGVQVEPDGTLLVRRDISAQGKSIIRINGQLVTLAILRELGPWLVTVHGQHDTHMLMQADKHIHWLDSYGEAEMGSAK
KEYSHLYVSYAKTKQDLERMSRNERELVQRIDLLQYQLNEIEAASLTPGEDEKLSMQRKKWMNIEKLFDGIQDAYRSLHG
DQRGMEWLGHAMSELERISAYDEQLLPILENVQSAYYQVEDAVLNLRQLADRLDFEPVQLQEVERRLDLIQTLKRKYGKN
VDEILEYAATIQDELDEMHHYDERLQQLEKRLVELAADLAVEASELSMIRQGCAVKLAEDIEQQLRELHMERARFAIDVR
HVPDEDGVEIEGSKWRVDANGMDTVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTLIFDEVDTGVSG
RAAQAIAEKLVRVAQKRQVLCITHLPQVASLADAHFLIQKNMSEHETTTLVRGLSEEERVIELARMLGGAEVTTKTEEHA
REMILLGQKRKAVT

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=697727 NDK47_RS15765 WP_251870712.1 3194715..3196439(-) (recN) [Brevibacillus ruminantium strain BB3-R1]
ATGCTGCTGGAGCTTTCCATACGCAACTTTGCGATTATCAAATCAGTCACCATCTCCTTTCAAAAAGGATTGAACATCTT
GACTGGGGAAACAGGTGCGGGAAAATCCATCATCATAGACGCGCTGGGACTTCTTTTGGGAGGACGAGCCTCGACCGACT
TTGTCCGGTACGGAGAAACGCGGGCAGAAGTCGAGGGGCTCTTTGAGCTGCCTCCCGGACATCCGGCATTTTCCGTTTGT
GAAAACTTTGGCGTCCAGGTGGAGCCGGACGGGACGCTGCTCGTTCGGCGGGATATCTCTGCCCAAGGCAAAAGCATTAT
CCGCATCAACGGCCAGCTTGTCACACTGGCCATTCTCCGGGAACTGGGGCCGTGGCTGGTCACTGTGCACGGACAGCATG
ACACGCATATGCTGATGCAGGCAGACAAGCATATCCATTGGCTGGACTCTTACGGTGAAGCGGAGATGGGTTCAGCCAAG
AAAGAGTATTCGCACTTGTATGTCAGCTACGCGAAAACCAAACAAGACCTCGAGCGGATGTCCCGCAATGAACGGGAGCT
GGTTCAGCGGATTGATCTGCTCCAATATCAACTGAATGAAATCGAGGCCGCCTCCCTGACGCCGGGCGAGGACGAAAAGC
TGAGCATGCAGCGGAAGAAATGGATGAATATCGAGAAGCTGTTCGACGGGATTCAGGATGCCTACCGCTCGCTGCACGGT
GACCAGCGCGGCATGGAGTGGCTGGGACATGCCATGAGTGAGCTGGAGAGAATCTCCGCTTATGATGAGCAGTTGCTGCC
GATTCTGGAAAATGTGCAGAGTGCTTATTACCAGGTGGAGGATGCTGTTCTGAATCTGAGACAGCTTGCCGATCGCCTCG
ATTTTGAGCCTGTGCAGCTGCAGGAAGTAGAGCGTCGACTGGATCTGATTCAAACGCTGAAGCGCAAATATGGGAAAAAC
GTGGATGAAATTCTGGAGTACGCGGCCACGATCCAGGATGAGCTGGATGAGATGCATCATTACGATGAGCGGCTGCAGCA
ATTGGAAAAGCGACTGGTAGAGCTGGCGGCAGACCTTGCTGTAGAGGCCTCCGAGCTGTCCATGATCCGTCAGGGATGTG
CGGTCAAGCTGGCAGAGGATATCGAACAGCAGCTCAGGGAGCTACATATGGAGCGTGCGCGTTTTGCCATTGACGTTCGT
CATGTACCGGACGAGGACGGCGTGGAGATCGAAGGCAGCAAATGGCGGGTGGACGCAAACGGGATGGATACCGTGGAGTT
CCTGATTTCCCCCAATCCTGGGGAACCGCTTAGACCATTGGCCAAGATTGCCTCAGGCGGGGAGCTTTCCCGTGTCATGC
TGGCGATCAAAACCATTCTGGCCGGGACGGATCAGGTGCAAACGCTGATTTTTGATGAAGTGGATACCGGGGTAAGCGGA
CGAGCGGCGCAAGCGATCGCCGAGAAGCTGGTACGGGTCGCACAAAAACGGCAGGTACTCTGCATCACGCACCTGCCACA
GGTTGCATCCCTGGCAGATGCTCACTTCCTGATCCAAAAAAACATGAGCGAACACGAAACCACCACGCTGGTCAGAGGAT
TGTCCGAGGAGGAGCGGGTAATCGAGCTGGCACGCATGCTGGGTGGAGCCGAGGTCACGACAAAAACGGAAGAACACGCC
CGGGAGATGATTCTCTTGGGGCAGAAGCGAAAAGCTGTCACGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.559

98.78

0.49