Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDK47_RS02245 Genome accession   NZ_CP098755
Coordinates   423171..424124 (+) Length   317 a.a.
NCBI ID   WP_251873277.1    Uniprot ID   -
Organism   Brevibacillus ruminantium strain BB3-R1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418171..429124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK47_RS02225 (NDK47_02225) - 419119..420504 (-) 1386 WP_251873270.1 PLP-dependent aminotransferase family protein -
  NDK47_RS02230 (NDK47_02230) - 420629..421570 (+) 942 WP_251873272.1 DMT family transporter -
  NDK47_RS02235 (NDK47_02235) - 421805..422092 (+) 288 WP_251873273.1 HesB/YadR/YfhF family protein -
  NDK47_RS02240 (NDK47_02240) - 422262..422819 (+) 558 WP_251873275.1 NADPH-dependent FMN reductase -
  NDK47_RS02245 (NDK47_02245) ceuB 423171..424124 (+) 954 WP_251873277.1 ABC transporter permease Machinery gene
  NDK47_RS02250 (NDK47_02250) - 424114..425064 (+) 951 WP_305883362.1 iron chelate uptake ABC transporter family permease subunit -
  NDK47_RS02255 (NDK47_02255) - 425058..425816 (+) 759 WP_251873278.1 ABC transporter ATP-binding protein -
  NDK47_RS02260 (NDK47_02260) - 425960..426952 (+) 993 WP_251873279.1 siderophore ABC transporter substrate-binding protein -
  NDK47_RS02265 (NDK47_02265) - 427100..427699 (+) 600 WP_251873280.1 Hsp20/alpha crystallin family protein -
  NDK47_RS02270 (NDK47_02270) - 427782..427988 (-) 207 WP_251875921.1 spore germination protein -
  NDK47_RS02275 (NDK47_02275) - 428045..428434 (-) 390 WP_251873281.1 spore germination protein GerPE -
  NDK47_RS02280 (NDK47_02280) - 428458..428655 (-) 198 WP_251873282.1 spore gernimation protein GerPD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35141.51 Da        Isoelectric Point: 10.0258

>NTDB_id=697714 NDK47_RS02245 WP_251873277.1 423171..424124(+) (ceuB) [Brevibacillus ruminantium strain BB3-R1]
MKKRYLFLALLLFSFASVFIGVKDISPLDLFHLRADQVEILLASRFPRLISIIIAGMGMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILISLMVFTTASPLVKMLVSFVFALLGTLVFMKILEKIKYKDTIFIPLVGLMFGNIISSLATFIAYKYDLI
QNMSAWLQGDFSMIMKGRYELLYISIPLLFIAYLYANKFTIAGMGEDFSKNLGLNYKQILYIGLILVALVTSAVVLTVGT
IPFLGLIIPNIVSIYRGDNLRSSLPHTALLGAVFVLFCDILGRVVIYPYELSISLTVGVIGSGIFAYLLMRRKAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=697714 NDK47_RS02245 WP_251873277.1 423171..424124(+) (ceuB) [Brevibacillus ruminantium strain BB3-R1]
ATGAAAAAAAGATATTTGTTTCTCGCCCTGCTTCTATTTTCATTTGCGTCCGTCTTTATCGGCGTCAAGGATATATCGCC
CCTGGACCTTTTTCACTTGAGAGCTGATCAGGTGGAAATCCTGCTGGCAAGCCGTTTTCCTCGCTTGATCAGCATTATTA
TTGCCGGCATGGGCATGAGCATTTGCGGACTGATCATGCAGCAGCTCAGCCGAAATAAATTTGTCTCTCCTACGACGGCG
GGGACGCTGGATTCGGCCCGGTTGGGGATTTTGATCTCGCTGATGGTGTTTACTACCGCAAGTCCGCTCGTCAAGATGCT
GGTCTCCTTTGTCTTCGCCCTGCTGGGAACCCTGGTGTTCATGAAGATTCTGGAGAAGATCAAGTACAAGGATACGATCT
TCATTCCGCTGGTCGGGTTGATGTTTGGCAATATCATCAGCTCGCTGGCTACCTTTATCGCATACAAGTACGATCTCATC
CAAAATATGTCGGCATGGCTGCAGGGCGATTTTTCGATGATCATGAAAGGGCGCTACGAGCTGCTGTATATCAGCATTCC
GCTGCTTTTCATCGCGTATCTGTATGCCAACAAGTTCACAATCGCCGGCATGGGTGAGGATTTTTCCAAAAACCTGGGAC
TGAACTACAAGCAGATTCTTTATATCGGGTTGATTCTGGTGGCACTCGTGACTTCAGCCGTGGTGCTGACAGTCGGAACG
ATTCCCTTTTTGGGTCTGATTATCCCGAATATTGTAAGCATCTACCGAGGGGACAATTTGCGCAGCAGTCTGCCGCACAC
GGCCTTGCTCGGTGCTGTCTTCGTCCTGTTTTGCGACATTCTGGGGCGAGTCGTTATCTACCCGTATGAACTCTCCATCA
GCTTGACCGTTGGCGTGATCGGGAGTGGGATTTTTGCTTACTTGCTGATGAGGAGAAAGGCATATGGCTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.352

96.845

0.546