Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NDK47_RS01310 Genome accession   NZ_CP098755
Coordinates   250317..251684 (+) Length   455 a.a.
NCBI ID   WP_251873102.1    Uniprot ID   -
Organism   Brevibacillus ruminantium strain BB3-R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 245317..256684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK47_RS01290 (NDK47_01290) - 245577..246041 (+) 465 WP_251873098.1 CtsR family transcriptional regulator -
  NDK47_RS01295 (NDK47_01295) - 246070..246588 (+) 519 WP_251873099.1 UvrB/UvrC motif-containing protein -
  NDK47_RS01300 (NDK47_01300) - 246609..247673 (+) 1065 WP_251873100.1 protein arginine kinase -
  NDK47_RS01305 (NDK47_01305) - 247752..250205 (+) 2454 WP_251873101.1 ATP-dependent Clp protease ATP-binding subunit -
  NDK47_RS01310 (NDK47_01310) radA 250317..251684 (+) 1368 WP_251873102.1 DNA repair protein RadA Machinery gene
  NDK47_RS01315 (NDK47_01315) disA 251695..252771 (+) 1077 WP_251873103.1 DNA integrity scanning diadenylate cyclase DisA -
  NDK47_RS01320 (NDK47_01320) pssA 252893..253621 (+) 729 WP_251873104.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NDK47_RS01325 (NDK47_01325) - 253714..254109 (-) 396 WP_251873105.1 DUF1573 domain-containing protein -
  NDK47_RS01330 (NDK47_01330) - 254397..255488 (+) 1092 WP_251873106.1 PIN/TRAM domain-containing protein -
  NDK47_RS01335 (NDK47_01335) ispD 255564..256256 (+) 693 WP_251873107.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49222.63 Da        Isoelectric Point: 6.6930

>NTDB_id=697713 NDK47_RS01310 WP_251873102.1 250317..251684(+) (radA) [Brevibacillus ruminantium strain BB3-R1]
MSKYKTKYACQECGYESPKWMGKCPGCNSWNTMVEEVSVKAASRHESLHGGQKQTAVPLTEVAGEEEPRMDTTIGELNRV
LGGGLVPGSMVLVGGDPGIGKSTLLLQTSFTLAHQGAKVLYVSGEESAKQIKLRADRLGMSTPPMYVLSENDLDLIEQHI
AQIEPQVLIIDSIQTVFHPAVQSAAGSVAQVRETTSQLMRIAKGKGIATFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKEKGLEEVGNPSEIFLAERPVGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRMATGVDHQRVAMIMAVLEKRVGLMLQNQDAYVNVAGGVRLDEPAVDLAVAVSIASSFRDHATNPHDVVIGEVGLTGEV
RGVSRIEQRIREAHKLGFKRVIIPSKNIRGLDVPPDIEVIGVSNISEALHEVIRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=697713 NDK47_RS01310 WP_251873102.1 250317..251684(+) (radA) [Brevibacillus ruminantium strain BB3-R1]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCCCCCAAATGGATGGGGAAATGTCCAGGCTG
CAATAGCTGGAACACCATGGTGGAAGAGGTTTCGGTCAAAGCAGCTTCCCGCCACGAGAGTCTGCACGGGGGGCAGAAGC
AAACAGCCGTCCCACTGACAGAGGTGGCAGGTGAAGAAGAACCCCGCATGGATACGACGATTGGTGAATTGAATCGTGTA
CTGGGAGGGGGACTGGTTCCAGGCTCGATGGTTCTCGTCGGCGGTGATCCGGGGATTGGAAAATCAACCTTGTTGTTGCA
AACGTCCTTTACCCTTGCTCATCAGGGGGCCAAGGTTCTGTATGTATCAGGCGAAGAATCGGCCAAACAAATCAAGCTGC
GGGCTGATCGGCTTGGCATGAGCACGCCGCCGATGTATGTATTGTCTGAAAATGATCTGGACTTGATCGAACAGCATATT
GCCCAGATCGAGCCGCAGGTCCTGATTATCGATTCCATACAAACGGTCTTTCATCCGGCTGTGCAGTCTGCCGCAGGGAG
TGTCGCGCAGGTAAGGGAAACAACCTCTCAGCTGATGCGGATTGCCAAAGGGAAGGGCATTGCGACGTTTATCGTCGGGC
ATGTGACCAAAGAAGGGTCGATCGCCGGTCCGCGCATGCTCGAGCATATGGTGGACGCCGTGCTTTATTTTGAAGGCGAG
AGGCATAATACATTTCGCATTTTGCGTGCCGTCAAAAATCGATTTGGATCGACAAACGAAATCGGCATTTTTGAAATGAA
GGAAAAGGGTCTGGAGGAGGTCGGGAATCCCTCGGAAATCTTCCTCGCAGAACGTCCTGTTGGAGTGGCAGGCTCAACAG
TTGTAGCCAGCATGGAAGGGACCAGACCGGTTTTGGTAGAGCTGCAGGCCCTGGTGGCGCCGACCAGCTTCGTGACGCCG
CGACGGATGGCCACGGGTGTAGATCATCAGCGCGTGGCGATGATCATGGCCGTTTTGGAAAAGCGGGTCGGCCTGATGCT
GCAAAACCAGGATGCCTATGTGAACGTGGCAGGCGGTGTCCGCCTAGACGAGCCAGCGGTCGACCTCGCTGTTGCTGTGA
GCATCGCCAGCAGTTTTCGTGATCATGCAACCAATCCCCATGATGTCGTGATTGGAGAAGTGGGGTTAACGGGGGAAGTG
CGCGGCGTATCCCGCATCGAACAGCGGATACGGGAAGCTCATAAGCTGGGTTTCAAACGTGTGATTATTCCGTCCAAAAA
CATCCGGGGCCTCGATGTGCCGCCCGATATTGAAGTGATCGGGGTCAGCAATATCTCGGAAGCCTTGCATGAAGTAATAA
GGGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.675
  radA Streptococcus pneumoniae Rx1

58.94

99.56

0.587
  radA Streptococcus pneumoniae D39

58.94

99.56

0.587
  radA Streptococcus pneumoniae R6

58.94

99.56

0.587
  radA Streptococcus pneumoniae TIGR4

58.94

99.56

0.587
  radA Streptococcus mitis NCTC 12261

58.94

99.56

0.587
  radA Streptococcus mitis SK321

58.94

99.56

0.587