Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NDO76_RS03855 Genome accession   NZ_CP098743
Coordinates   782203..783876 (+) Length   557 a.a.
NCBI ID   WP_002393460.1    Uniprot ID   -
Organism   Enterococcus faecalis strain M9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 777203..788876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDO76_RS03825 (NDO76_03825) - 777454..778299 (+) 846 WP_016615591.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  NDO76_RS03830 (NDO76_03830) xseA 778309..779655 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  NDO76_RS03835 (NDO76_03835) - 779657..779887 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  NDO76_RS03840 (NDO76_03840) - 779887..780768 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  NDO76_RS03845 (NDO76_03845) - 780782..781597 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  NDO76_RS03850 (NDO76_03850) - 781736..782185 (+) 450 WP_002358881.1 ArgR family transcriptional regulator -
  NDO76_RS03855 (NDO76_03855) recN 782203..783876 (+) 1674 WP_002393460.1 DNA repair protein RecN Machinery gene
  NDO76_RS03860 (NDO76_03860) - 783967..784077 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  NDO76_RS03865 (NDO76_03865) - 784145..785110 (-) 966 WP_016615589.1 magnesium transporter CorA family protein -
  NDO76_RS03870 (NDO76_03870) - 785355..785747 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  NDO76_RS03875 (NDO76_03875) mraZ 785981..786466 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  NDO76_RS03880 (NDO76_03880) rsmH 786481..787437 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NDO76_RS03885 (NDO76_03885) ftsL 787454..787861 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62600.97 Da        Isoelectric Point: 4.5521

>NTDB_id=697635 NDO76_RS03855 WP_002393460.1 782203..783876(+) (recN) [Enterococcus faecalis strain M9]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDAVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=697635 NDO76_RS03855 WP_002393460.1 782203..783876(+) (recN) [Enterococcus faecalis strain M9]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAATGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATGCTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGTTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TTACTAGTATTGTTTTTGATGAAGTGGACACAGGAGTCAGTGGTCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496