Detailed information NTG0697588

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NDR85_RS19020
• Genome accession: NZ_CP098738
• Coordinates: 3763998..3765143 (+)
• Length: 381 a.a.
• NCBI ID: WP_044159817.1
• Uniprot ID: -
• Organism: Bacillus halotolerans strain XE48
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3758998..3770143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDR85_RS19000 (NDR85_18960)	-	3759897..3761174 (+)	1278	WP_044159811.1	pitrilysin family protein	-
NDR85_RS19005 (NDR85_18965)	-	3761171..3761872 (+)	702	WP_044159813.1	hypothetical protein	-
NDR85_RS19010 (NDR85_18970)	-	3761879..3762233 (-)	355	Protein_3694	YncE family protein	-
NDR85_RS19015 (NDR85_18975)	-	3762411..3763769 (-)	1359	WP_044159815.1	YncE family protein	-
NDR85_RS19020 (NDR85_18980)	rapF	3763998..3765143 (+)	1146	WP_044159817.1	tetratricopeptide repeat protein	Regulator
NDR85_RS19025 (NDR85_18985)	-	3765127..3765246 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NDR85_RS19030 (NDR85_18990)	speB	3765353..3766225 (-)	873	WP_044159819.1	agmatinase	-
NDR85_RS19035 (NDR85_18995)	speE	3766286..3767116 (-)	831	WP_059335162.1	spermidine synthase	-
NDR85_RS19040 (NDR85_19000)	-	3767317..3769392 (+)	2076	WP_044159823.1	transglycosylase domain-containing protein	-
NDR85_RS19045 (NDR85_19005)	-	3769425..3769847 (-)	423	WP_044159825.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45458.93 Da
• Isoelectric Point: 4.8458

>NTDB_id=697588 NDR85_RS19020 WP_044159817.1 3763998..3765143(+) (rapF) [Bacillus halotolerans strain XE48]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLTFVTDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAAQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMVPSLPQAFFLITQIYFKLGKIDNACEYHKKGRDYSIAAGDTVYLTEFEFLESLYLSGPDEAAI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=697588 NDR85_RS19020 WP_044159817.1 3763998..3765143(+) (rapF) [Bacillus halotolerans strain XE48]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
GGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGATCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTG
TGACAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCC
ATGGACTATGCACGTCAAGCCTTTGAAATATACAATGAACAAACTACATATGATATCAGAATGATTCAATGCCAATCCCT
GTTTGGAGCTAACTTTTTGGATCTGAAACAGTATGATAAAGCAATTGCCCATTTCCAAAAAGCTTATACACTTGCTGAGG
CGGCACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGTCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGAATCGAAAATGGTTCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGCAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGATTATTCAATAG
CTGCCGGAGACACTGTGTACTTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGCAGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGCAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (193-213)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.265	100	0.793
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567