Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NDR85_RS14095 Genome accession   NZ_CP098738
Coordinates   2781359..2782105 (-) Length   248 a.a.
NCBI ID   WP_044154157.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776359..2787105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS14070 (NDR85_14040) mreC 2776767..2777639 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  NDR85_RS14075 (NDR85_14045) mreB 2777670..2778683 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  NDR85_RS14080 (NDR85_14050) radC 2778775..2779470 (-) 696 WP_044154171.1 DNA repair protein RadC -
  NDR85_RS14085 (NDR85_14055) - 2779508..2780077 (-) 570 WP_044154168.1 Maf family nucleotide pyrophosphatase -
  NDR85_RS14090 (NDR85_14060) - 2780228..2781226 (-) 999 WP_044154162.1 SPOR domain-containing protein -
  NDR85_RS14095 (NDR85_14065) comC 2781359..2782105 (-) 747 WP_044154157.1 A24 family peptidase Machinery gene
  NDR85_RS14100 (NDR85_14070) - 2782246..2783538 (-) 1293 WP_044154151.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NDR85_RS14105 (NDR85_14075) valS 2783598..2786240 (-) 2643 WP_044154145.1 valine--tRNA ligase -
  NDR85_RS14110 (NDR85_14080) - 2786688..2786879 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26537.09 Da        Isoelectric Point: 9.7865

>NTDB_id=697569 NDR85_RS14095 WP_044154157.1 2781359..2782105(-) (comC) [Bacillus halotolerans strain XE48]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLFAVIGLVLGVKMLAAAFFFSVLIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=697569 NDR85_RS14095 WP_044154157.1 2781359..2782105(-) (comC) [Bacillus halotolerans strain XE48]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCTGTTCTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCAGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATATCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

80.645

100

0.806