Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NDR85_RS13200 Genome accession   NZ_CP098738
Coordinates   2622880..2623305 (-) Length   141 a.a.
NCBI ID   WP_044154477.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2621398..2622750 2622880..2623305 flank 130


Gene organization within MGE regions


Location: 2621398..2623305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS13195 (NDR85_13165) - 2621398..2622750 (-) 1353 WP_263870676.1 IS1182 family transposase -
  NDR85_RS13200 (NDR85_13170) nucA/comI 2622880..2623305 (-) 426 WP_044154477.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15556.74 Da        Isoelectric Point: 5.2215

>NTDB_id=697565 NDR85_RS13200 WP_044154477.1 2622880..2623305(-) (nucA/comI) [Bacillus halotolerans strain XE48]
MKRWMAMLLLAAAVFLCLLGKDMTAPQQVKGAALYDKILYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=697565 NDR85_RS13200 WP_044154477.1 2622880..2623305(-) (nucA/comI) [Bacillus halotolerans strain XE48]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCGGTTTTTCTTTGTTTGTTGGGAAAGGATATGACGGCTCCGCA
ACAGGTCAAGGGGGCTGCTTTATATGACAAAATTTTATACTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAGTCATTA
AAAGGAATTCCGACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGCGCCGGAGCCGA
TGTCCGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCAGTTATCCGGATGGCA
CCAAAGTGTTGTTTATTGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.29

87.943

0.539