Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NDR85_RS12940 Genome accession   NZ_CP098738
Coordinates   2577731..2578498 (-) Length   255 a.a.
NCBI ID   WP_215510330.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2572731..2583498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS12920 (NDR85_12895) - 2572904..2573716 (-) 813 WP_044154519.1 pyruvate, water dikinase regulatory protein -
  NDR85_RS12925 (NDR85_12900) ccpN 2573742..2574380 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  NDR85_RS12930 (NDR85_12905) glyS 2574514..2576553 (-) 2040 WP_263870671.1 glycine--tRNA ligase subunit beta -
  NDR85_RS12935 (NDR85_12910) glyQ 2576546..2577433 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  NDR85_RS12940 (NDR85_12915) recO 2577731..2578498 (-) 768 WP_215510330.1 DNA repair protein RecO Machinery gene
  NDR85_RS12945 (NDR85_12920) - 2578535..2578678 (-) 144 WP_024122087.1 YqzL family protein -
  NDR85_RS12950 (NDR85_12925) era 2578822..2579727 (-) 906 WP_044154513.1 GTPase Era -
  NDR85_RS12955 (NDR85_12930) cdd 2579708..2580118 (-) 411 WP_059293579.1 cytidine deaminase -
  NDR85_RS12960 (NDR85_12935) - 2580232..2580609 (-) 378 WP_059335436.1 diacylglycerol kinase family protein -
  NDR85_RS12965 (NDR85_12940) ybeY 2580590..2581063 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  NDR85_RS12970 (NDR85_12945) pgpH 2581064..2583199 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29275.00 Da        Isoelectric Point: 8.5592

>NTDB_id=697561 NDR85_RS12940 WP_215510330.1 2577731..2578498(-) (recO) [Bacillus halotolerans strain XE48]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQGG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=697561 NDR85_RS12940 WP_215510330.1 2577731..2578498(-) (recO) [Bacillus halotolerans strain XE48]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCCTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGGTGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCATCGCTGCTTTGATAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGACCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941