Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NDR85_RS08210 Genome accession   NZ_CP098738
Coordinates   1612866..1613144 (+) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus halotolerans strain XE48     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607866..1618144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS08190 (NDR85_08170) - 1609058..1609969 (+) 912 WP_044156034.1 ketopantoate reductase family protein -
  NDR85_RS08195 (NDR85_08175) - 1609997..1611229 (-) 1233 WP_044156760.1 aminopeptidase -
  NDR85_RS08200 (NDR85_08180) - 1611343..1611474 (-) 132 WP_024121251.1 protein YkpC -
  NDR85_RS08205 (NDR85_08185) mreBH 1611577..1612584 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  NDR85_RS08210 (NDR85_08190) abrB 1612866..1613144 (+) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  NDR85_RS08215 (NDR85_08195) - 1613335..1614621 (+) 1287 WP_044156033.1 ATP-binding protein -
  NDR85_RS08220 (NDR85_08200) - 1614637..1615467 (+) 831 WP_044156031.1 gamma-glutamylcyclotransferase -
  NDR85_RS08225 (NDR85_08205) ktrC 1615539..1616204 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  NDR85_RS08230 (NDR85_08210) ade 1616361..1618094 (+) 1734 WP_044156030.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=697543 NDR85_RS08210 WP_024121253.1 1612866..1613144(+) (abrB) [Bacillus halotolerans strain XE48]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=697543 NDR85_RS08210 WP_024121253.1 1612866..1613144(+) (abrB) [Bacillus halotolerans strain XE48]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565