Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NDR85_RS08085 Genome accession   NZ_CP098738
Coordinates   1588764..1589339 (+) Length   191 a.a.
NCBI ID   WP_044156058.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583764..1594339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS08055 (NDR85_08035) dapD 1583937..1584647 (+) 711 WP_024121226.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NDR85_RS08060 (NDR85_08040) - 1584718..1585842 (+) 1125 WP_044156065.1 N-acetyldiaminopimelate deacetylase -
  NDR85_RS08065 (NDR85_08045) - 1585903..1586148 (+) 246 WP_044156064.1 YkuS family protein -
  NDR85_RS08070 (NDR85_08050) - 1586183..1586986 (-) 804 WP_044156062.1 mechanosensitive ion channel family protein -
  NDR85_RS08075 (NDR85_08055) ahpA 1587230..1587772 (+) 543 WP_044156061.1 biofilm-specific peroxidase AhpA -
  NDR85_RS08080 (NDR85_08060) ykuV 1587854..1588312 (+) 459 WP_044156060.1 thiol-disulfide oxidoreductase YkuV -
  NDR85_RS08085 (NDR85_08065) rok 1588764..1589339 (+) 576 WP_044156058.1 transcriptional regulator Rok Regulator
  NDR85_RS08090 (NDR85_08070) - 1589381..1590346 (-) 966 WP_044156057.1 hypothetical protein -
  NDR85_RS08095 (NDR85_08075) - 1590479..1591078 (+) 600 WP_263870954.1 molybdenum cofactor guanylyltransferase -
  NDR85_RS08100 (NDR85_08080) - 1591130..1592149 (+) 1020 WP_263870955.1 MoeB/ThiF family adenylyltransferase -
  NDR85_RS08105 (NDR85_08085) glp 1592167..1593459 (+) 1293 WP_044156053.1 gephyrin-like molybdotransferase Glp -
  NDR85_RS08110 (NDR85_08090) mobB 1593420..1593941 (+) 522 WP_044156052.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21799.79 Da        Isoelectric Point: 9.8783

>NTDB_id=697542 NDR85_RS08085 WP_044156058.1 1588764..1589339(+) (rok) [Bacillus halotolerans strain XE48]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEVKKDFRSERKTDSLPVLAELAAQEIRSYQPPS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGDIESAESATE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=697542 NDR85_RS08085 WP_044156058.1 1588764..1589339(+) (rok) [Bacillus halotolerans strain XE48]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGATTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGCGATAAAATATACGCTAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAGTCAAAAAGGATTTCC
GTTCTGAACGAAAAACTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCCATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCTAAAGCAGCTAAACTGCGTGAAGCGGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCCGAGCTTCAAAAAGAGATTGAAAAGGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCGTATCGCGGCCAGTACATTTTAGAGGGTGACATCGAATCAGCTGA
ATCAGCAACAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

96.859

100

0.969