Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NDR85_RS07980 Genome accession   NZ_CP098738
Coordinates   1572161..1572625 (-) Length   154 a.a.
NCBI ID   WP_044156084.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567161..1577625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS07960 (NDR85_07940) kinA 1567624..1569444 (+) 1821 WP_044156088.1 sporulation histidine kinase KinA -
  NDR85_RS07965 (NDR85_07945) - 1569454..1570637 (-) 1184 Protein_1510 aminotransferase A -
  NDR85_RS07970 (NDR85_07950) - 1570839..1571000 (-) 162 WP_003238943.1 hypothetical protein -
  NDR85_RS07975 (NDR85_07955) cheV 1571208..1572119 (+) 912 WP_044156086.1 chemotaxis protein CheV -
  NDR85_RS07980 (NDR85_07960) kre 1572161..1572625 (-) 465 WP_044156084.1 YkyB family protein Regulator
  NDR85_RS07985 (NDR85_07965) - 1572751..1574043 (-) 1293 WP_044156081.1 MFS transporter -
  NDR85_RS07990 (NDR85_07970) - 1574119..1574613 (-) 495 WP_081638296.1 L,D-transpeptidase family protein -
  NDR85_RS07995 (NDR85_07975) - 1574671..1575531 (-) 861 WP_044156078.1 metallophosphoesterase -
  NDR85_RS08000 (NDR85_07980) fadH 1575676..1576440 (+) 765 WP_044156076.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17885.67 Da        Isoelectric Point: 10.3545

>NTDB_id=697541 NDR85_RS07980 WP_044156084.1 1572161..1572625(-) (kre) [Bacillus halotolerans strain XE48]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=697541 NDR85_RS07980 WP_044156084.1 1572161..1572625(-) (kre) [Bacillus halotolerans strain XE48]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAGAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

98.701

100

0.987