Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NDR85_RS06340 Genome accession   NZ_CP098738
Coordinates   1284286..1285239 (+) Length   317 a.a.
NCBI ID   WP_044156402.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279286..1290239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS06315 (NDR85_06315) argF 1281085..1282058 (+) 974 Protein_1180 ornithine carbamoyltransferase -
  NDR85_RS06320 (NDR85_06320) - 1282144..1282323 (+) 180 WP_003239319.1 YjzC family protein -
  NDR85_RS06325 (NDR85_06325) - 1282368..1282553 (-) 186 WP_010333727.1 YjzD family protein -
  NDR85_RS06330 (NDR85_06330) - 1282812..1283549 (+) 738 WP_044156404.1 hypothetical protein -
  NDR85_RS06335 (NDR85_06335) - 1283632..1284195 (+) 564 WP_044156403.1 hypothetical protein -
  NDR85_RS06340 (NDR85_06340) med 1284286..1285239 (+) 954 WP_044156402.1 BMP family ABC transporter substrate-binding protein Regulator
  NDR85_RS06345 (NDR85_06345) comZ 1285254..1285445 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  NDR85_RS06350 (NDR85_06350) - 1285475..1285705 (-) 231 WP_082687943.1 hypothetical protein -
  NDR85_RS06355 (NDR85_06355) fabH 1285871..1286809 (+) 939 WP_010333732.1 beta-ketoacyl-ACP synthase III -
  NDR85_RS06360 (NDR85_06360) fabF 1286832..1288070 (+) 1239 WP_024120905.1 beta-ketoacyl-ACP synthase II -
  NDR85_RS06365 (NDR85_06365) - 1288150..1288935 (+) 786 WP_044156399.1 DUF2268 domain-containing protein -
  NDR85_RS06370 (NDR85_06370) appD 1289126..1290112 (+) 987 WP_044156398.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35286.89 Da        Isoelectric Point: 4.8692

>NTDB_id=697532 NDR85_RS06340 WP_044156402.1 1284286..1285239(+) (med) [Bacillus halotolerans strain XE48]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSTYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLFGHGSEYEEVFNLVSEDYPDMQFVISNAKAKADNVTSVHLSGEAIGFFGGMTAAHMSKTNQVGVIASFSWQ
PEVDGFIKGAKYENPNIEVNTKYTDHWDDDSTAVNLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFDKGTLKGGDHYYDLKSRVVEMGTFSPLVDKAFQKRIAKLVKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=697532 NDR85_RS06340 WP_044156402.1 1284286..1285239(+) (med) [Bacillus halotolerans strain XE48]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCTACATACAATGTGGACGTCTACTATAAAGAAGGCGTAAAAACAGATGAAGATATTATAAATGCGATTGAAGAT
TTTCATAAGCGCGGCGTCAATCTCCTCTTTGGCCATGGAAGTGAGTATGAAGAAGTATTTAACTTGGTGAGTGAAGACTA
TCCGGATATGCAGTTTGTGATTTCAAACGCAAAAGCTAAAGCGGACAATGTCACAAGCGTTCATCTCAGCGGGGAAGCAA
TCGGCTTTTTCGGCGGAATGACCGCTGCCCATATGTCAAAAACCAATCAGGTCGGCGTCATCGCTTCTTTTTCATGGCAG
CCAGAAGTTGACGGCTTTATAAAAGGGGCTAAGTATGAAAATCCTAATATAGAAGTGAATACAAAATATACGGATCACTG
GGATGATGATTCGACTGCGGTGAACCTTTATCAAAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTATATGCGATCGGCTATGTCACAGATCAATCCGATCTT
GGCGAGAACACCGTGTTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATTATAGCTGAGCAATTCGACAAAGG
CACTTTAAAAGGCGGCGATCACTATTACGATCTGAAAAGCCGAGTTGTCGAAATGGGAACCTTCAGTCCGCTTGTAGACA
AAGCCTTTCAGAAAAGAATCGCCAAACTGGTCAAAACATATAACAAAACAGGTGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

93.375

100

0.934