Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NDR85_RS05880 Genome accession   NZ_CP098738
Coordinates   1193902..1194480 (+) Length   192 a.a.
NCBI ID   WP_044156506.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188902..1199480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS21040 - 1189406..1189921 (-) 516 WP_369810943.1 methyl-accepting chemotaxis protein -
  NDR85_RS21045 - 1190213..1190587 (-) 375 Protein_1089 protoglobin domain-containing protein -
  NDR85_RS05865 (NDR85_05865) - 1190845..1192377 (-) 1533 WP_263870939.1 FAD-dependent oxidoreductase -
  NDR85_RS05870 (NDR85_05870) - 1192489..1193346 (+) 858 WP_044156509.1 SDR family oxidoreductase -
  NDR85_RS05875 (NDR85_05875) - 1193375..1193608 (-) 234 WP_044156508.1 IDEAL domain-containing protein -
  NDR85_RS05880 (NDR85_05880) comK 1193902..1194480 (+) 579 WP_044156506.1 competence transcription factor ComK Regulator
  NDR85_RS05885 (NDR85_05885) - 1194525..1195424 (-) 900 WP_044156505.1 SDR family oxidoreductase -
  NDR85_RS05890 (NDR85_05890) - 1195636..1195905 (+) 270 WP_044156503.1 excalibur calcium-binding domain-containing protein -
  NDR85_RS05895 (NDR85_05895) - 1195946..1197415 (-) 1470 WP_044156502.1 sodium:solute symporter -
  NDR85_RS05900 (NDR85_05900) - 1197412..1197612 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  NDR85_RS05905 (NDR85_05905) - 1197838..1198200 (-) 363 WP_044156501.1 hypothetical protein -
  NDR85_RS05910 (NDR85_05910) - 1198356..1198976 (+) 621 WP_044156499.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22487.84 Da        Isoelectric Point: 8.0250

>NTDB_id=697529 NDR85_RS05880 WP_044156506.1 1193902..1194480(+) (comK) [Bacillus halotolerans strain XE48]
MSQKTDTPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKKMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=697529 NDR85_RS05880 WP_044156506.1 1193902..1194480(+) (comK) [Bacillus halotolerans strain XE48]
ATGAGTCAGAAAACTGACACACCATTAGAATCGTATGAAGTAAACAGTGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCGAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAAAGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.312

100

0.953