Detailed information    

insolico Bioinformatically predicted

Overview


Name   recX   Type   Regulator
Locus tag   NDR85_RS04770 Genome accession   NZ_CP098738
Coordinates   992598..993389 (+) Length   263 a.a.
NCBI ID   WP_044163727.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context


Location: 987598..998389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS04740 (NDR85_04740) - 988440..989471 (+) 1032 WP_024120642.1 iron chelate uptake ABC transporter family permease subunit -
  NDR85_RS04745 (NDR85_04745) - 989587..990465 (+) 879 WP_044163721.1 PhzF family phenazine biosynthesis isomerase -
  NDR85_RS04750 (NDR85_04750) - 990553..991137 (+) 585 WP_024120644.1 nitroreductase -
  NDR85_RS04755 (NDR85_04755) - 991176..991367 (-) 192 WP_044163723.1 YfhD family protein -
  NDR85_RS04760 (NDR85_04760) - 991434..991544 (-) 111 WP_010333447.1 YfhE family protein -
  NDR85_RS04765 (NDR85_04765) - 991598..992509 (-) 912 WP_044163725.1 TIGR01777 family oxidoreductase -
  NDR85_RS04770 (NDR85_04770) recX 992598..993389 (+) 792 WP_044163727.1 recombination regulator RecX Regulator
  NDR85_RS04775 (NDR85_04775) - 993396..993716 (+) 321 WP_044163729.1 YfhH family protein -
  NDR85_RS04780 (NDR85_04780) - 993853..995046 (+) 1194 WP_263870911.1 MFS transporter -
  NDR85_RS04785 (NDR85_04785) - 995080..995232 (-) 153 WP_010333452.1 small, acid-soluble spore protein K -
  NDR85_RS04790 (NDR85_04790) - 995357..995626 (+) 270 WP_024120650.1 YfhJ family protein -
  NDR85_RS04795 (NDR85_04795) - 995662..996045 (-) 384 WP_044163733.1 hypothetical protein -
  NDR85_RS04800 (NDR85_04800) - 996047..996259 (-) 213 WP_010333455.1 helix-turn-helix transcriptional regulator -
  NDR85_RS04805 (NDR85_04805) - 996452..996970 (+) 519 WP_044163735.1 SH3 domain-containing protein -
  NDR85_RS04810 (NDR85_04810) - 997056..997388 (+) 333 WP_044163737.1 SdpI family protein -
  NDR85_RS04815 (NDR85_04815) - 997375..998238 (+) 864 WP_263870912.1 alpha/beta fold hydrolase -

Sequence


Protein


Download         Length: 263 a.a.        Molecular weight: 30756.92 Da        Isoelectric Point: 6.0895

>NTDB_id=697524 NDR85_RS04770 WP_044163727.1 992598..993389(+) (recX) [Bacillus halotolerans strain XE48]
MPFITKISAQKKNTERFNIFLDEKYAFSVDADVLVKFELTKGKELDDLEIIEIQYGDEVKKGFNRAIDFLSYRMRSTKEV
EDHLKKKETSAPVITEVIHKLNDYNYLNDQEFAAAYVSTHKKTNGKGPDVLFRELKAKGIDDDTIKDTLSSFSFEEQTEK
AVKHIEKLLKKDKKLSSKEIKQRAQMQLQRKGFSFDVISAALEQIEYENDEDTEKEALRLHAEKALRKYRYDGSYESAMK
VKQFLFRKGFSLDLIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=697524 NDR85_RS04770 WP_044163727.1 992598..993389(+) (recX) [Bacillus halotolerans strain XE48]
ATGCCATTTATTACAAAGATTTCAGCGCAAAAGAAGAATACGGAACGCTTTAATATTTTTCTGGATGAAAAATATGCTTT
CAGTGTTGACGCAGATGTGCTCGTGAAATTTGAGCTTACAAAGGGAAAAGAGCTTGATGACCTCGAGATCATTGAGATTC
AATACGGAGATGAAGTGAAAAAAGGCTTCAACCGTGCGATTGATTTTTTATCCTATCGAATGCGGTCAACGAAAGAGGTA
GAAGACCATTTAAAGAAAAAAGAAACCTCGGCGCCCGTCATTACGGAAGTGATTCATAAGCTGAACGATTACAACTATTT
AAATGACCAAGAGTTTGCGGCGGCCTACGTGAGCACTCACAAAAAAACAAACGGAAAAGGGCCTGACGTTTTGTTCAGAG
AGCTGAAAGCGAAGGGGATCGATGACGACACCATCAAAGATACACTGAGTTCTTTCTCCTTTGAAGAACAGACGGAAAAA
GCAGTTAAGCATATCGAAAAGCTTCTGAAGAAAGACAAGAAACTCTCTTCAAAAGAAATCAAACAGCGAGCACAGATGCA
GCTGCAGCGCAAAGGCTTCTCATTTGATGTCATCTCTGCGGCGCTGGAGCAGATTGAATACGAAAATGACGAAGATACTG
AAAAAGAAGCGCTGCGTCTTCATGCGGAAAAAGCGCTTAGAAAATACCGTTATGACGGCTCCTATGAAAGTGCCATGAAG
GTCAAACAATTTTTATTCAGAAAAGGATTCTCACTCGATTTAATCGATCAATTTCTGCAGGAAGAGGAGTAG

Domains


Predicted by InterproScan.

(84-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

90.875

100

0.909