Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NDR85_RS00245 Genome accession   NZ_CP098738
Coordinates   44404..44694 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus halotolerans strain XE48     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39404..49694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS00205 (NDR85_00205) darA 39424..39753 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  NDR85_RS00210 (NDR85_00210) - 39766..40206 (+) 441 WP_024123606.1 YaaR family protein -
  NDR85_RS00215 (NDR85_00215) holB 40218..41207 (+) 990 WP_044153513.1 DNA polymerase III subunit delta' -
  NDR85_RS00220 (NDR85_00220) ricT 41210..42037 (+) 828 WP_010332686.1 competence/sporulation regulator complex protein RicT -
  NDR85_RS00225 (NDR85_00225) yabA 42052..42411 (+) 360 WP_010332687.1 replication initiation-control protein YabA -
  NDR85_RS00230 (NDR85_00230) - 42472..43215 (+) 744 WP_044153511.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NDR85_RS00235 (NDR85_00235) - 43202..43501 (+) 300 WP_010332689.1 GIY-YIG nuclease family protein -
  NDR85_RS00240 (NDR85_00240) rsmI 43476..44354 (+) 879 WP_044153509.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NDR85_RS00245 (NDR85_00245) abrB 44404..44694 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  NDR85_RS00250 (NDR85_00250) metG 45191..47185 (+) 1995 WP_044153507.1 methionine--tRNA ligase -
  NDR85_RS00255 (NDR85_00255) - 47264..48031 (+) 768 WP_044153506.1 TatD family hydrolase -
  NDR85_RS00260 (NDR85_00260) - 48277..49500 (+) 1224 WP_044153522.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=697513 NDR85_RS00245 WP_003226760.1 44404..44694(-) (abrB) [Bacillus halotolerans strain XE48]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=697513 NDR85_RS00245 WP_003226760.1 44404..44694(-) (abrB) [Bacillus halotolerans strain XE48]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTGATTCCTATCGAATTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTACGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCTGGCGGCAAATTGGTGCTAAGCAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1