Detailed information NTG0697507

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NDR89_RS21025
• Genome accession: NZ_CP098736
• Coordinates: 2412637..2415150 (-)
• Length: 837 a.a.
• NCBI ID: WP_252252802.1
• Uniprot ID: -
• Organism: Cupriavidus gilardii strain QJ1
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2412637..2423558	2412637..2415150	within	0

Gene organization within MGE regions

Location: 2412637..2423558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDR89_RS21025 (NDR89_21025)	comA	2412637..2415150 (-)	2514	WP_252252802.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NDR89_RS21030 (NDR89_21030)	-	2415331..2416173 (-)	843	WP_053821511.1	TatD family hydrolase	-
NDR89_RS21035 (NDR89_21035)	lolD	2416201..2416959 (-)	759	WP_053821510.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
NDR89_RS21040 (NDR89_21040)	-	2416952..2418202 (-)	1251	WP_252252803.1	lipoprotein-releasing ABC transporter permease subunit	-
NDR89_RS21045 (NDR89_21045)	-	2418331..2419482 (+)	1152	WP_252252804.1	hypothetical protein	-
NDR89_RS21050 (NDR89_21050)	recJ	2419574..2421271 (+)	1698	WP_053821508.1	single-stranded-DNA-specific exonuclease RecJ	-
NDR89_RS21055 (NDR89_21055)	-	2421383..2422129 (-)	747	WP_151023243.1	M23 family metallopeptidase	-
NDR89_RS21060 (NDR89_21060)	prfB	2422454..2423558 (+)	1105	WP_144425760.1	peptide chain release factor 2	-

Sequence

Protein

• Length: 837 a.a.
• Molecular weight: 88991.76 Da
• Isoelectric Point: 11.6881

>NTDB_id=697507 NDR89_RS21025 WP_252252802.1 2412637..2415150(-) (comA) [Cupriavidus gilardii strain QJ1]
MRLTLCAFVAGCWLVQQLPALPPASIGVTAGLAALVVVIALSPLAGRPGPSSIGLHVRLLATVLAALIVGAAWSVWRAER
RLAERLAAQFEGVTLSLTGVVSGLPTGNGEGLRFAFTVDGDRPAGLPPLLSLGWQQAPPDLLPGTRLAVTARLKRPHGLA
NPHGFDYEYWLLQRGIGATGYVLAARPAAPVALRPAWRIARWRAQIRSRMLAAMPAEAPLAGVLVALAIGDQSGIAAEQW
RWFTRTGIGHLVSISGLHITMISGLAGALARALWRRSFGVGRWLRRPLPLRCPAQRAAALVAVAMALGYGLLSGMEVPAQ
RTVAMVSVAALALWWQRRPPASLVLAWAAAVALALDPWAVRAAGFWLSFGAVAAIFVAASQRTVAVTGGEPSQRSVWQAR
WQGVRRHLAESVRTQWAVTIGLLPPTLLLFQQVSVVSPLANALAIPLVSLLVTPLALCAALLAAWPVDWPAGGAIAMAAA
SLLALAHQAMAWLAAALVRLAAPDWAVWQAARPDTVELAFALLGTAVLLAPRAFGWGWRVHGLVLLIPMLSSGRAPLPAA
AFRATALDVGQGAAVLIETRGHRLLYDAGPAYGPADAPRPSAGERVVVPFLRAVGIHSLDALVISHEDADHAGGARDVMA
ALPVRRLWGSLPRGHPLWRWPPGGGPDVGQVCAAGIAWQWDGVRFELLHPLPGQGDDAAIGSNARSCVLRVSSPYAAMLL
TGDIDRAAELAMVARLPPDALRADLLLVPHHGSRTSSSDEWLDAVRPAAAVFQLGYRNRYRHPHAQVWARYGRRGIARYR
SDRTGAVEVVADRDGIAIASFRQQARRYWRPAPDAPE

Nucleotide

• Length: 2514 bp

>NTDB_id=697507 NDR89_RS21025 WP_252252802.1 2412637..2415150(-) (comA) [Cupriavidus gilardii strain QJ1]
ATGCGCCTGACGCTGTGCGCCTTCGTCGCGGGCTGCTGGCTGGTGCAGCAATTGCCGGCATTGCCGCCAGCGTCGATCGG
CGTGACCGCCGGTCTGGCCGCATTGGTCGTGGTGATCGCGCTGTCGCCGCTTGCCGGGCGTCCGGGGCCTTCCTCGATCG
GCCTCCATGTGCGCTTGCTGGCCACCGTGCTGGCCGCGCTGATCGTCGGCGCGGCATGGTCCGTCTGGCGTGCCGAGCGT
CGCCTGGCCGAGCGGCTTGCGGCGCAGTTCGAAGGCGTCACGCTGTCGCTGACGGGCGTGGTGTCGGGACTGCCGACGGG
CAACGGCGAGGGCCTGCGTTTCGCGTTCACGGTCGACGGCGACAGGCCGGCCGGCTTGCCGCCGCTGCTGTCGCTCGGCT
GGCAGCAGGCGCCGCCCGATCTGCTGCCCGGCACGCGGCTGGCGGTGACCGCACGGCTGAAGCGGCCACATGGTCTCGCC
AATCCGCATGGCTTCGACTACGAATACTGGCTGCTGCAGCGGGGCATTGGCGCAACCGGCTACGTGCTGGCGGCCCGCCC
CGCAGCGCCGGTGGCCCTGCGGCCGGCCTGGCGCATTGCCCGCTGGCGTGCGCAGATCCGGTCCCGCATGCTGGCGGCGA
TGCCGGCCGAGGCGCCGTTGGCGGGCGTGCTGGTGGCGCTGGCGATCGGCGACCAGAGCGGCATCGCCGCCGAGCAGTGG
CGCTGGTTCACGCGCACCGGCATCGGCCATCTGGTCAGCATCTCGGGCCTGCATATCACGATGATCTCGGGGCTGGCGGG
CGCGCTGGCACGGGCCCTGTGGCGGCGCTCGTTCGGCGTGGGCAGATGGCTGCGGCGGCCGCTGCCGTTGCGTTGTCCGG
CGCAGCGGGCGGCGGCGCTGGTCGCCGTGGCGATGGCGCTCGGCTATGGGCTGCTGTCGGGTATGGAGGTGCCGGCGCAA
CGCACGGTGGCGATGGTATCCGTGGCCGCGCTGGCGCTGTGGTGGCAGCGCCGGCCGCCGGCCTCGCTGGTGCTGGCCTG
GGCCGCCGCGGTCGCGCTGGCGCTCGACCCGTGGGCGGTGCGGGCGGCGGGCTTCTGGCTGTCGTTCGGCGCGGTCGCCG
CGATCTTCGTGGCGGCGTCGCAGCGAACCGTGGCCGTGACCGGCGGCGAGCCGTCGCAGCGTTCGGTCTGGCAGGCGCGC
TGGCAAGGCGTGCGGCGGCACCTGGCCGAGTCGGTGCGCACGCAATGGGCCGTCACGATCGGACTGCTGCCGCCGACGCT
GCTGTTGTTCCAGCAGGTGTCGGTGGTGTCGCCGCTGGCCAATGCGCTGGCGATTCCGCTCGTCAGCCTGCTGGTGACGC
CGCTGGCGTTGTGCGCGGCGCTGCTGGCCGCCTGGCCCGTGGACTGGCCGGCAGGCGGCGCCATCGCGATGGCGGCCGCA
TCGCTGCTGGCGCTGGCGCACCAGGCGATGGCATGGCTGGCGGCGGCGCTGGTGCGGCTGGCGGCGCCGGACTGGGCCGT
CTGGCAGGCGGCGCGGCCGGACACGGTCGAGCTCGCCTTCGCGCTGCTCGGCACGGCGGTGCTGCTGGCCCCGCGCGCCT
TCGGCTGGGGCTGGCGCGTGCACGGCCTGGTGCTGCTGATCCCGATGCTGTCGAGCGGCCGCGCGCCGCTGCCGGCCGCG
GCCTTCCGCGCGACGGCGCTCGATGTCGGACAGGGCGCGGCGGTGCTGATCGAGACCCGCGGCCATCGCCTGCTGTACGA
CGCCGGGCCAGCCTATGGCCCCGCCGACGCGCCACGGCCCAGCGCCGGCGAACGCGTGGTGGTGCCGTTCCTGCGCGCGG
TCGGCATCCATTCGCTCGATGCGCTGGTGATCAGCCACGAGGATGCCGATCATGCCGGCGGTGCGCGCGACGTGATGGCC
GCGCTGCCGGTCCGGCGCCTGTGGGGCTCGCTGCCGCGTGGCCATCCGCTATGGCGGTGGCCGCCCGGGGGCGGACCCGA
TGTCGGTCAGGTGTGCGCGGCCGGTATCGCGTGGCAATGGGACGGCGTGCGTTTCGAACTGCTGCATCCGTTGCCGGGGC
AGGGCGACGACGCGGCGATCGGCAGCAATGCGCGCAGCTGCGTGCTGCGGGTCTCGAGTCCTTACGCCGCGATGCTGCTG
ACCGGCGATATCGACCGCGCCGCCGAACTGGCGATGGTGGCGCGCCTGCCGCCCGATGCGCTGCGCGCCGACCTGCTGCT
GGTGCCGCACCATGGCAGCCGCACCTCGTCCAGCGACGAATGGCTCGACGCGGTAAGGCCCGCCGCGGCGGTGTTCCAGC
TCGGCTATCGCAACCGCTACCGGCATCCGCATGCGCAGGTATGGGCGCGCTATGGCCGCCGCGGGATCGCGCGCTATCGC
AGCGATCGCACCGGCGCGGTCGAAGTCGTCGCGGATCGGGACGGCATCGCGATCGCGTCGTTCCGGCAGCAGGCGCGGCG
CTACTGGCGGCCGGCGCCGGATGCGCCGGAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (227-530)

• Domain of unknown function (DUF4131) (DUF4131) (20-183)

• Metallo-beta-lactamase superfamily (Lactamase_B) (568-771)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	48.492	100	0.499