Detailed information NTG0697505

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NDR89_RS19150
• Genome accession: NZ_CP098736
• Coordinates: 2111061..2112425 (-)
• Length: 454 a.a.
• NCBI ID: WP_252252557.1
• Uniprot ID: -
• Organism: Cupriavidus gilardii strain QJ1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2106061..2117425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDR89_RS19135 (NDR89_19135)	-	2107860..2109701 (-)	1842	WP_198751683.1	ABC transporter ATP-binding protein	-
NDR89_RS19140 (NDR89_19140)	-	2109748..2110233 (-)	486	WP_006577845.1	disulfide bond formation protein B	-
NDR89_RS19145 (NDR89_19145)	-	2110553..2110999 (+)	447	WP_315904144.1	hypothetical protein	-
NDR89_RS19150 (NDR89_19150)	radA	2111061..2112425 (-)	1365	WP_252252557.1	DNA repair protein RadA	Machinery gene
NDR89_RS19155 (NDR89_19155)	alr	2112479..2113612 (-)	1134	WP_053821642.1	alanine racemase	-
NDR89_RS19160 (NDR89_19160)	lplT	2114130..2115449 (+)	1320	WP_053821641.1	lysophospholipid transporter LplT	-
NDR89_RS19165 (NDR89_19165)	-	2115556..2116761 (-)	1206	WP_252252558.1	DUF1853 family protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 48513.68 Da
• Isoelectric Point: 7.2038

>NTDB_id=697505 NDR89_RS19150 WP_252252557.1 2111061..2112425(-) (radA) [Cupriavidus gilardii strain QJ1]
MAKTKTVYTCTECGGSVPRWQGQCPHCQQWNTLVESVPETPSARRFQPLAASSTVQRLSEIEASDVPRFTSGIEEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQALANLAASRRVLYVSGEESGAQIALRAQRLGIDSPSLGLLPEIQLEKIQATLDA
DKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGTTIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEQTVSGSCVMVTQEGSRPLLVEIQALVDAAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQDRLREAAKLGFTQAVIPKANAPKQPIDGLQVIAVERIEQAIERVRYLDG

Nucleotide

• Length: 1365 bp

>NTDB_id=697505 NDR89_RS19150 WP_252252557.1 2111061..2112425(-) (radA) [Cupriavidus gilardii strain QJ1]
TTGGCAAAGACCAAGACCGTTTACACCTGTACCGAATGCGGCGGCTCCGTGCCGCGCTGGCAGGGGCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTCGAGAGCGTGCCCGAGACGCCGTCGGCGCGGCGCTTCCAGCCGCTGGCAGCCTCGAGCA
CGGTGCAGCGGCTGTCCGAAATCGAGGCGTCCGACGTGCCGCGCTTTACCAGCGGCATCGAGGAATTCGACCGGGTGCTC
GGCGGCGGGCTGGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCGAATCTGGCGGCCAGCCGGCGCGTGCTCTATGTCAGCGGCGAGGAGTCGGGCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGGCATCGACAGTCCGAGCCTGGGGCTGCTGCCCGAGATCCAGCTCGAGAAGATCCAGGCGACACTCGACGCC
GACAAGCCCGAGGTCGCGGTGATCGACTCGATCCAGACGCTGTACTCGGAGGCGCTGACATCGGCGCCGGGCTCGGTGGC
ACAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGATCGCCAAGAGCAGCGGCACCACGATCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGACACGCAT
TCGTCGCACCGGCTGATCCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGACCGAGCG
CGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGCAGACCGTGTCCGGGTCCTGCGTGATGG
TCACGCAGGAGGGCTCGCGCCCGCTGCTGGTCGAGATCCAGGCGCTGGTCGATGCGGCGCACGTGCCGAATCCGCGCCGC
CTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGCTGCTGCTGGCCGTGCTGCACCGCCACGCCGGCATCGCCTGCTTCGA
CCAGGACGTGTTCCTCAATGCGGTGGGCGGGGTCAAGATCACCGAACCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCCTTGCCGCGCGGACTGGTGGTATTCGGCGAGGTGGGGCTGGCCGGCGAGATCCGCCCA
AGCCCGCGCGGCCAGGACCGGCTGCGCGAGGCCGCCAAGCTGGGCTTTACGCAGGCGGTGATCCCGAAGGCCAATGCGCC
GAAGCAGCCGATCGACGGGCTCCAGGTGATCGCCGTCGAGCGAATCGAGCAGGCGATCGAGCGGGTGCGCTACCTCGACG
GCTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (59-217)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.658	100	0.509
radA	Streptococcus pneumoniae Rx1	46.154	100	0.463
radA	Streptococcus pneumoniae D39	46.154	100	0.463
radA	Streptococcus pneumoniae R6	46.154	100	0.463
radA	Streptococcus pneumoniae TIGR4	46.154	100	0.463
radA	Streptococcus mitis SK321	46.341	99.339	0.46
radA	Streptococcus mitis NCTC 12261	46.12	99.339	0.458