Detailed information NTG0697496

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP79_RS17205
• Genome accession: NZ_CP115232
• Coordinates: 3666093..3667097 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F050
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3661093..3672097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP79_RS17175 (PCP79_17175)	fghA	3661185..3662036 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
PCP79_RS17180 (PCP79_17180)	ispF	3662107..3662580 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP79_RS17185 (PCP79_17185)	truD	3662577..3663644 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PCP79_RS17190 (PCP79_17190)	surE	3663632..3664381 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
PCP79_RS17195 (PCP79_17195)	-	3664414..3665049 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP79_RS17200 (PCP79_17200)	-	3665095..3665988 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP79_RS17205 (PCP79_17205)	rpoS	3666093..3667097 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP79_RS17210 (PCP79_17210)	fdxA	3667523..3667846 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP79_RS17215 (PCP79_17215)	mutS	3667913..3670480 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP79_RS17220 (PCP79_17220)	-	3670606..3671613 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=697496 PCP79_RS17205 WP_003113871.1 3666093..3667097(+) (rpoS) [Pseudomonas aeruginosa strain F050]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=697496 PCP79_RS17205 WP_003113871.1 3666093..3667097(+) (rpoS) [Pseudomonas aeruginosa strain F050]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653