Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HXS63_RS16660 Genome accession   NZ_AP023226
Coordinates   3469131..3469736 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YJ3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3464131..3474736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS63_RS16640 aes 3464168..3465127 (+) 960 WP_000801813.1 acetyl esterase -
  HXS63_RS16645 hemH 3465124..3466086 (-) 963 WP_001250103.1 ferrochelatase -
  HXS63_RS16650 adk 3466322..3466966 (-) 645 WP_001220233.1 adenylate kinase -
  HXS63_RS16655 htpG 3467147..3469021 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HXS63_RS16660 recR 3469131..3469736 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HXS63_RS16665 ybaB 3469736..3470065 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HXS63_RS16670 dnaX 3470118..3472049 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HXS63_RS16675 apt 3472178..3472729 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HXS63_RS16680 ybaN 3472882..3473259 (-) 378 WP_001188905.1 DUF454 family protein -
  HXS63_RS16685 priC 3473329..3473856 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  HXS63_RS16690 rsmS 3473870..3474031 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=69749 HXS63_RS16660 WP_001195025.1 3469131..3469736(-) (recR) [Escherichia coli strain YJ3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=69749 HXS63_RS16660 WP_001195025.1 3469131..3469736(-) (recR) [Escherichia coli strain YJ3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment