Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   M5E07_RS14935 Genome accession   NZ_CP098732
Coordinates   3102618..3102944 (-) Length   108 a.a.
NCBI ID   WP_252220435.1    Uniprot ID   A0AAE9S060
Organism   Acinetobacter tibetensis strain Y-23     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3097618..3107944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS14915 (M5E07_14915) - 3097841..3098506 (-) 666 WP_252220424.1 FHA domain-containing protein -
  M5E07_RS14920 (M5E07_14920) gspD 3098581..3100839 (-) 2259 WP_252220427.1 type II secretion system secretin GspD -
  M5E07_RS14925 (M5E07_14925) - 3100882..3101709 (-) 828 WP_252220430.1 type II secretion system protein N -
  M5E07_RS14930 (M5E07_14930) gspN 3101709..3102452 (-) 744 WP_252220433.1 type II secretion system protein N -
  M5E07_RS14935 (M5E07_14935) hns 3102618..3102944 (-) 327 WP_252220435.1 H-NS histone family protein Regulator
  M5E07_RS14940 (M5E07_14940) - 3103097..3103525 (-) 429 WP_116763488.1 thioesterase family protein -
  M5E07_RS14945 (M5E07_14945) - 3103534..3104727 (-) 1194 WP_252220437.1 heme biosynthesis protein HemY -
  M5E07_RS14950 (M5E07_14950) - 3104729..3105580 (-) 852 WP_252220439.1 hypothetical protein -
  M5E07_RS14955 (M5E07_14955) - 3105577..3106356 (-) 780 WP_252220441.1 uroporphyrinogen-III synthase -
  M5E07_RS14960 (M5E07_14960) hemC 3106360..3107277 (-) 918 WP_252220443.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12338.18 Da        Isoelectric Point: 6.4258

>NTDB_id=697486 M5E07_RS14935 WP_252220435.1 3102618..3102944(-) (hns) [Acinetobacter tibetensis strain Y-23]
MMPDISNLSVEELKRLQVEAEALIVSKKDQAIEDAYTQIMDIADKVGLSIEQILEFGATKRKKSTRKSVEPRYRNKSDVS
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=697486 M5E07_RS14935 WP_252220435.1 3102618..3102944(-) (hns) [Acinetobacter tibetensis strain Y-23]
ATGATGCCGGACATTAGTAATTTATCTGTAGAAGAGTTAAAGCGTTTACAAGTAGAAGCGGAAGCCTTAATCGTTTCTAA
AAAAGACCAAGCAATTGAAGATGCATATACTCAGATTATGGATATTGCTGATAAAGTGGGTTTGAGTATTGAGCAAATCT
TAGAGTTTGGCGCAACTAAACGTAAGAAAAGTACTCGTAAATCTGTAGAGCCACGTTATCGCAATAAATCAGATGTATCA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGCTGGTTAGTGGCTGAATTGGAAAAAGGCGCAAAACTTGAGGATTTTCT
CATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824