Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   M5E07_RS14420 Genome accession   NZ_CP098732
Coordinates   2991214..2993436 (+) Length   740 a.a.
NCBI ID   WP_252220271.1    Uniprot ID   A0AAE9S080
Organism   Acinetobacter tibetensis strain Y-23     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2986214..2998436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS14395 (M5E07_14395) - 2986296..2987135 (+) 840 WP_116758736.1 CBS domain-containing protein -
  M5E07_RS14400 (M5E07_14400) lnt 2987132..2988691 (+) 1560 WP_252220264.1 apolipoprotein N-acyltransferase -
  M5E07_RS14405 (M5E07_14405) - 2988765..2989109 (-) 345 WP_252220266.1 hypothetical protein -
  M5E07_RS14410 (M5E07_14410) gspG 2989387..2989824 (-) 438 WP_116758739.1 type II secretion system major pseudopilin GspG -
  M5E07_RS14415 (M5E07_14415) gspF 2989856..2991061 (-) 1206 WP_252220269.1 type II secretion system inner membrane protein GspF -
  M5E07_RS14420 (M5E07_14420) priA 2991214..2993436 (+) 2223 WP_252220271.1 primosomal protein N' Machinery gene
  M5E07_RS14425 (M5E07_14425) - 2993491..2995332 (+) 1842 WP_252220273.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  M5E07_RS14430 (M5E07_14430) - 2995383..2996258 (+) 876 WP_252220275.1 Hsp33 family molecular chaperone HslO -
  M5E07_RS14435 (M5E07_14435) - 2996558..2997022 (+) 465 WP_252220277.1 DUF2147 domain-containing protein -
  M5E07_RS14440 (M5E07_14440) - 2997176..2998132 (+) 957 WP_116758745.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84138.18 Da        Isoelectric Point: 8.6893

>NTDB_id=697482 M5E07_RS14420 WP_252220271.1 2991214..2993436(+) (priA) [Acinetobacter tibetensis strain Y-23]
MPNTVSPPFVPYRIRVAVPAHVYDCFDYQISADDYAQAKVGARVAVPFGSRNLIGVIMQKLTPDTPENPKFKLKPIQALL
DDDAILDSKVLTLLTWAAQYYQFPIGEVVQSALPSLLRQGKPYDLLAHMWRLLDLHADEKVKRSEKQQHAYKILKLHPAG
TAENILNLAGIETATLKALEKKGICEAYLEQKDFSPQALSLAQMPLTANPDQKHAIQQVLKSLSSYHAYLLDGLTGSGKT
EVYLQIMYEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLTDAKRLQAWQSAQMGKASIILGTRSAIYTPL
HNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSMESYALADQGKLTRLELNERAGTALLPKLHI
LDLKVGRKQHGFSQFLLDEMHKRLARKEQVLIFLNRRGYAPVLICESCAWQAKCPHCDANFTIHTQPYQHLHCHHCGTIH
RMPDHCPQCHHTELKPIGMGTVKVEESLKELFPEFEVIRVDRDSTSRVGSWQKIYDRIQKSEPIILLGTQMLAKGHHFPY
VSLVAILDIDSGLLSVDFRAPERTAQLIVQVAGRAGRGEKKGDVYLQTLRPEHPLLHTLVDGDYRQFARQTLKERQQALF
PPFRYAALIRCESKSQEQNQQYLTEHAQQLRQISELNIDIWGPIPAPMERKAGRYQAHMVLLSQDRARLHYYLRAWWQNM
LQHKPANMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=697482 M5E07_RS14420 WP_252220271.1 2991214..2993436(+) (priA) [Acinetobacter tibetensis strain Y-23]
ATGCCAAATACAGTATCGCCCCCTTTCGTGCCTTATCGGATTCGCGTAGCCGTTCCAGCCCATGTTTATGACTGTTTCGA
CTATCAAATTTCCGCAGATGATTATGCGCAGGCGAAGGTTGGAGCGCGTGTTGCTGTGCCCTTTGGATCTCGAAATTTAA
TTGGTGTGATTATGCAAAAACTCACACCTGACACTCCTGAGAATCCCAAGTTTAAGCTAAAACCCATTCAAGCTTTGCTA
GATGACGATGCCATTCTAGACAGTAAAGTTTTAACTTTGTTGACATGGGCAGCGCAATATTATCAATTTCCAATTGGTGA
AGTGGTGCAAAGCGCCTTGCCAAGCTTATTACGTCAAGGCAAACCGTATGATCTGTTGGCCCACATGTGGCGGCTGCTTG
ACCTACATGCAGATGAAAAAGTTAAACGCTCTGAAAAACAACAACATGCTTATAAAATTTTAAAACTCCACCCCGCAGGT
ACGGCAGAAAATATTCTGAATTTGGCGGGCATTGAAACCGCGACTTTAAAAGCGCTGGAAAAGAAAGGCATCTGTGAAGC
CTATTTAGAACAAAAAGATTTTAGCCCACAAGCCCTGAGTTTGGCGCAAATGCCACTGACCGCCAATCCCGATCAAAAGC
ATGCCATTCAGCAGGTATTGAAATCGCTCTCGTCTTATCATGCCTATTTACTGGATGGTTTAACGGGCAGTGGTAAAACA
GAAGTTTACTTGCAAATCATGTACGAGGTACTAAAACAAGGCAAACAAGTGTTGGTCTTAGTGCCTGAAATTGGCTTGAC
ACCACAAACCATCAGCCGTTTTCAATCGCGTTTCCACTGCCATATTGCCCTGCTGCACTCAGGACTGACAGATGCTAAAC
GTTTACAAGCATGGCAAAGTGCACAAATGGGCAAAGCCTCGATTATTTTAGGCACACGTTCCGCAATTTATACCCCATTG
CACAATTTAGGCTTAATCATTTTAGATGAAGAGCATGATCTGTCTTTTAAACAGCAAGAAGGCTTTCGTTATCATGCTCG
TGATGTCGCGCTCTATCGCGCGCATTTGGAAAACTGTCCCATTATTTTAGGTTCAGCAACACCGAGCATGGAAAGTTATG
CACTGGCCGATCAAGGTAAACTGACCCGACTAGAATTAAATGAACGTGCAGGCACAGCACTGTTGCCCAAATTACATATC
TTGGATTTAAAAGTCGGGCGCAAACAGCATGGTTTTAGTCAGTTTTTACTGGATGAAATGCACAAGCGTCTAGCGCGCAA
AGAACAAGTACTGATTTTTCTCAATCGACGGGGCTATGCCCCTGTACTGATTTGTGAAAGTTGTGCTTGGCAAGCGAAAT
GTCCGCATTGTGATGCCAACTTTACTATACATACCCAACCTTATCAGCATTTGCATTGTCATCATTGTGGCACCATTCAT
CGCATGCCAGACCATTGCCCGCAATGTCATCACACTGAGCTCAAACCGATTGGCATGGGCACCGTCAAAGTTGAAGAAAG
TTTAAAAGAACTCTTTCCAGAATTTGAAGTCATTCGGGTCGATCGAGATTCCACCAGTCGTGTTGGTAGCTGGCAAAAAA
TTTATGATCGCATTCAAAAAAGCGAGCCGATTATTTTACTCGGCACGCAAATGCTTGCCAAAGGGCATCATTTTCCCTAT
GTCTCTTTGGTGGCAATTCTAGACATTGATTCAGGCTTACTCAGTGTCGATTTCCGTGCACCAGAACGCACTGCCCAACT
CATTGTTCAAGTGGCGGGGCGCGCAGGTCGTGGTGAGAAAAAAGGCGATGTCTATTTACAGACCTTACGCCCAGAACACC
CGTTATTGCACACTTTAGTGGATGGTGATTATCGACAATTTGCTCGCCAGACGTTGAAAGAACGACAACAGGCGTTATTT
CCACCGTTTCGTTATGCTGCGCTGATTCGCTGTGAATCGAAAAGTCAGGAACAAAATCAACAGTATCTTACCGAACACGC
ACAACAACTGCGTCAGATTTCCGAACTCAACATCGATATTTGGGGACCTATTCCTGCACCAATGGAACGTAAAGCGGGTC
GTTATCAAGCGCATATGGTGCTATTGTCTCAAGATCGGGCACGTTTACATTATTATTTGAGAGCATGGTGGCAAAACATG
TTGCAGCACAAACCTGCCAACATGAAACTGAGTCTGGATATAGACCCACAGGAATTGAGTTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

69.987

100

0.703