Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   M5E07_RS02035 Genome accession   NZ_CP098732
Coordinates   416278..417159 (+) Length   293 a.a.
NCBI ID   WP_116761893.1    Uniprot ID   -
Organism   Acinetobacter tibetensis strain Y-23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411278..422159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E07_RS02010 (M5E07_02010) wrbA 412141..412737 (+) 597 WP_116761906.1 NAD(P)H:quinone oxidoreductase -
  M5E07_RS02015 (M5E07_02015) - 412806..413174 (-) 369 WP_116761993.1 hypothetical protein -
  M5E07_RS16345 - 413418..413651 (-) 234 WP_350464058.1 diguanylate cyclase -
  M5E07_RS02020 (M5E07_02020) - 413819..414394 (-) 576 WP_116761900.1 xanthine phosphoribosyltransferase -
  M5E07_RS02025 (M5E07_02025) - 414484..415143 (-) 660 WP_252223655.1 DUF3108 domain-containing protein -
  M5E07_RS16320 - 415106..415240 (+) 135 WP_265735816.1 hypothetical protein -
  M5E07_RS02030 (M5E07_02030) - 415364..416047 (-) 684 WP_252221422.1 hypothetical protein -
  M5E07_RS02035 (M5E07_02035) tonB2 416278..417159 (+) 882 WP_116761893.1 TonB family protein Machinery gene
  M5E07_RS02040 (M5E07_02040) - 417156..417461 (-) 306 WP_252221424.1 antibiotic biosynthesis monooxygenase -
  M5E07_RS02045 (M5E07_02045) ybeY 417541..418023 (-) 483 WP_252221431.1 rRNA maturation RNase YbeY -
  M5E07_RS02050 (M5E07_02050) - 418042..419118 (-) 1077 WP_116761887.1 PhoH family protein -
  M5E07_RS02055 (M5E07_02055) miaB 419158..420615 (-) 1458 WP_252221433.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33523.30 Da        Isoelectric Point: 9.7952

>NTDB_id=697463 M5E07_RS02035 WP_116761893.1 416278..417159(+) (tonB2) [Acinetobacter tibetensis strain Y-23]
MILNKINYTPLLRAWWKDPIFTTAVGFALALHLAVLAIEFAAPTQQDATVKEIAVTLRPSEQKVEHADFLAQADQNGSGT
FREAHRMSSDMPAPMLEQSAGEKQMETLQKTQQKRELNFEEKVLMTTLSWQKQAEQTRRKKAMDELNSQFQAKAAMVASL
EAQYLQRQQNFSRQQKIKTVDGIQAKQDITAAYLEKFRQKVEFYGNRYYPEQAKQQRLAGEVRLMVILNRNGGIRAIRLI
ESSGHDLLDEAAKASVRKAAPFTGFDSKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=697463 M5E07_RS02035 WP_116761893.1 416278..417159(+) (tonB2) [Acinetobacter tibetensis strain Y-23]
ATGATACTGAATAAAATAAATTATACGCCTTTATTGCGCGCGTGGTGGAAAGACCCGATTTTTACAACTGCGGTGGGCTT
TGCGCTGGCTTTACATCTTGCTGTTTTAGCCATTGAATTTGCTGCACCCACGCAACAAGATGCGACAGTGAAGGAAATTG
CAGTGACGTTACGACCAAGTGAACAAAAGGTTGAACATGCAGATTTTCTGGCGCAAGCAGATCAGAACGGTTCAGGAACA
TTTCGTGAAGCACATCGAATGTCGAGCGATATGCCAGCACCTATGCTGGAACAAAGTGCGGGTGAAAAGCAAATGGAAAC
ATTGCAAAAGACCCAACAAAAACGTGAACTGAATTTTGAAGAAAAAGTCTTGATGACCACGCTCAGTTGGCAAAAGCAAG
CAGAACAAACTCGTCGGAAAAAGGCGATGGATGAATTAAATAGTCAGTTCCAAGCCAAAGCTGCCATGGTGGCGAGTCTG
GAAGCACAATATTTACAGCGCCAACAGAATTTCAGCCGCCAACAGAAAATTAAAACGGTCGATGGTATTCAAGCCAAACA
AGATATTACAGCGGCATATTTAGAAAAATTTAGACAGAAAGTAGAATTTTACGGTAACCGTTATTATCCAGAGCAAGCAA
AACAGCAGCGTTTAGCGGGTGAAGTTCGCTTGATGGTCATTCTGAACCGCAATGGCGGGATTCGGGCCATTCGTTTAATT
GAAAGTTCTGGGCACGACTTACTTGATGAAGCAGCGAAAGCATCGGTACGTAAAGCAGCGCCATTTACTGGATTTGATAG
CAAAATGAAAGATATCTCTGAGTTACGCATTGTCCGAACGTGGCGTTTTGACCCTGCTGAAGCAGAGTTTGAAGTGCATT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.214

95.563

0.7