Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LC189_RS02105 Genome accession   NZ_CP098727
Coordinates   397389..398075 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SauR3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392389..403075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC189_RS02070 (LC189_002070) yqeH 392916..394016 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LC189_RS02075 (LC189_002075) aroE 394030..394836 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  LC189_RS02080 (LC189_002080) yhbY 394840..395130 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  LC189_RS02085 (LC189_002085) nadD 395133..395702 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LC189_RS02090 (LC189_002090) yqeK 395692..396276 (+) 585 WP_224826847.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LC189_RS02095 (LC189_002095) rsfS 396277..396630 (+) 354 WP_001088020.1 ribosome silencing factor -
  LC189_RS02100 (LC189_002100) - 396633..397349 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LC189_RS02105 (LC189_002105) comEA 397389..398075 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  LC189_RS02110 (LC189_002110) - 398167..398628 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LC189_RS02115 (LC189_002115) comEC 398633..400834 (+) 2202 WP_001837660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LC189_RS02120 (LC189_002120) holA 400891..401865 (+) 975 WP_001282567.1 DNA polymerase III subunit delta -
  LC189_RS02125 (LC189_002125) rpsT 401910..402161 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=697393 LC189_RS02105 WP_001788928.1 397389..398075(+) (comEA) [Staphylococcus aureus strain SauR3]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=697393 LC189_RS02105 WP_001788928.1 397389..398075(+) (comEA) [Staphylococcus aureus strain SauR3]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969