Detailed information NTG0697293

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP36_RS21060
• Genome accession: NZ_CP115227
• Coordinates: 4469023..4470027 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F052
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4464023..4475027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP36_RS21030 (PCP36_21025)	fghA	4464115..4464966 (+)	852	WP_174216210.1	S-formylglutathione hydrolase	-
PCP36_RS21035 (PCP36_21030)	ispF	4465037..4465510 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP36_RS21040 (PCP36_21035)	truD	4465507..4466574 (+)	1068	WP_174216209.1	tRNA pseudouridine(13) synthase TruD	-
PCP36_RS21045 (PCP36_21040)	surE	4466562..4467311 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP36_RS21050 (PCP36_21045)	-	4467344..4467979 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP36_RS21055 (PCP36_21050)	-	4468025..4468918 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP36_RS21060 (PCP36_21055)	rpoS	4469023..4470027 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP36_RS21065 (PCP36_21060)	fdxA	4470454..4470777 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PCP36_RS21070 (PCP36_21065)	mutS	4470844..4473411 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP36_RS21075 (PCP36_21070)	-	4473537..4474544 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=697293 PCP36_RS21060 WP_003113871.1 4469023..4470027(+) (rpoS) [Pseudomonas aeruginosa strain F052]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=697293 PCP36_RS21060 WP_003113871.1 4469023..4470027(+) (rpoS) [Pseudomonas aeruginosa strain F052]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653