Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP36_RS16265 Genome accession   NZ_CP115227
Coordinates   3448512..3448877 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F052     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3443512..3453877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP36_RS16235 (PCP36_16230) pyrR 3444134..3444646 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PCP36_RS16240 (PCP36_16235) ruvX 3444758..3445192 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP36_RS16245 (PCP36_16240) - 3445192..3445761 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  PCP36_RS16250 (PCP36_16245) - 3445810..3446703 (-) 894 WP_003084580.1 TonB family protein -
  PCP36_RS16255 (PCP36_16250) gshB 3446850..3447803 (-) 954 WP_003100943.1 glutathione synthase -
  PCP36_RS16260 (PCP36_16255) pilG 3448058..3448465 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP36_RS16265 (PCP36_16260) pilH 3448512..3448877 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP36_RS16270 (PCP36_16265) - 3448928..3449464 (+) 537 WP_174216039.1 chemotaxis protein CheW -
  PCP36_RS16275 (PCP36_16270) pilJ 3449549..3451597 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  PCP36_RS16280 (PCP36_16275) pilK 3451658..3452533 (+) 876 WP_016252883.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=697281 PCP36_RS16265 WP_003084587.1 3448512..3448877(+) (pilH) [Pseudomonas aeruginosa strain F052]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=697281 PCP36_RS16265 WP_003084587.1 3448512..3448877(+) (pilH) [Pseudomonas aeruginosa strain F052]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAACCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364