Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HXS63_RS05770 Genome accession   NZ_AP023226
Coordinates   1203027..1203542 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain YJ3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198027..1208542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS63_RS05725 csrA 1198614..1198799 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HXS63_RS05755 yqaB 1200257..1200823 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HXS63_RS05760 yqaA 1200820..1201248 (+) 429 WP_001287454.1 YqaA family protein -
  HXS63_RS05765 gshA 1201321..1202877 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HXS63_RS05770 luxS 1203027..1203542 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HXS63_RS05775 emrB 1203606..1205144 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HXS63_RS05780 emrA 1205161..1206333 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HXS63_RS05785 emrR 1206460..1206990 (-) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HXS63_RS05790 ygaH 1207081..1207416 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HXS63_RS05795 ygaZ 1207406..1208143 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=69720 HXS63_RS05770 WP_001130211.1 1203027..1203542(+) (luxS) [Escherichia coli strain YJ3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=69720 HXS63_RS05770 WP_001130211.1 1203027..1203542(+) (luxS) [Escherichia coli strain YJ3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment