Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP44_RS23990 Genome accession   NZ_CP115226
Coordinates   5098809..5099138 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain F053     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5093809..5104138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP44_RS23975 (PCP44_23950) - 5094509..5095468 (+) 960 WP_023091541.1 UDP-glucose 4-epimerase family protein -
  PCP44_RS23980 (PCP44_23955) - 5095465..5096490 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  PCP44_RS23985 (PCP44_23960) - 5096621..5098618 (+) 1998 WP_023091542.1 polysaccharide biosynthesis protein -
  PCP44_RS23990 (PCP44_23965) comEA/comE1 5098809..5099138 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  PCP44_RS24000 (PCP44_23975) - 5099355..5100551 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP44_RS24005 (PCP44_23980) uvrB 5100739..5102751 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=697196 PCP44_RS23990 WP_003138486.1 5098809..5099138(+) (comEA/comE1) [Pseudomonas aeruginosa strain F053]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=697196 PCP44_RS23990 WP_003138486.1 5098809..5099138(+) (comEA/comE1) [Pseudomonas aeruginosa strain F053]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385