Detailed information NTG0697191

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP44_RS21245
• Genome accession: NZ_CP115226
• Coordinates: 4536557..4537561 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F053
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4531557..4542561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP44_RS21215 (PCP44_21200)	fghA	4531649..4532500 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
PCP44_RS21220 (PCP44_21205)	ispF	4532571..4533044 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP44_RS21225 (PCP44_21210)	truD	4533041..4534108 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PCP44_RS21230 (PCP44_21215)	surE	4534096..4534845 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP44_RS21235 (PCP44_21220)	-	4534878..4535513 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP44_RS21240 (PCP44_21225)	-	4535559..4536452 (+)	894	WP_023092574.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP44_RS21245 (PCP44_21230)	rpoS	4536557..4537561 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP44_RS21250 (PCP44_21235)	fdxA	4537988..4538311 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP44_RS21255 (PCP44_21240)	mutS	4538378..4540945 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PCP44_RS21260 (PCP44_21245)	-	4541071..4542078 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=697191 PCP44_RS21245 WP_003113871.1 4536557..4537561(+) (rpoS) [Pseudomonas aeruginosa strain F053]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=697191 PCP44_RS21245 WP_003113871.1 4536557..4537561(+) (rpoS) [Pseudomonas aeruginosa strain F053]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCTTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653