Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DOM81_RS10600 Genome accession   NZ_AP018447
Coordinates   2063185..2063607 (-) Length   140 a.a.
NCBI ID   WP_002955972.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain P06D0798     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058185..2068607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM81_RS10580 cysE 2058192..2058950 (-) 759 WP_014667432.1 serine O-acetyltransferase -
  DOM81_RS10585 speA 2058964..2060814 (-) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  DOM81_RS10590 ybeY 2060939..2061604 (+) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  DOM81_RS11135 - 2062264..2062506 (+) 243 WP_133246272.1 hypothetical protein -
  DOM81_RS10595 - 2062444..2063085 (-) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  DOM81_RS10600 dprB 2063185..2063607 (-) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  DOM81_RS10605 dprA 2063607..2064392 (-) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  DOM81_RS10610 - 2064429..2065502 (-) 1074 WP_110581895.1 divergent polysaccharide deacetylase family protein -
  DOM81_RS10615 minE 2065503..2065754 (-) 252 WP_002955975.1 cell division topological specificity factor MinE -
  DOM81_RS10620 minD 2065751..2066566 (-) 816 WP_002955976.1 septum site-determining protein MinD -
  DOM81_RS10625 - 2066633..2067184 (-) 552 WP_002955977.1 hypothetical protein -
  DOM81_RS10630 - 2067184..2068098 (-) 915 WP_002955978.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15456.94 Da        Isoelectric Point: 7.1676

>NTDB_id=69707 DOM81_RS10600 WP_002955972.1 2063185..2063607(-) (dprB) [Helicobacter cinaedi strain P06D0798]
MENKKILACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=69707 DOM81_RS10600 WP_002955972.1 2063185..2063607(-) (dprB) [Helicobacter cinaedi strain P06D0798]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTTGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493

Multiple sequence alignment