Detailed information NTG0696971

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP90_RS20985
• Genome accession: NZ_CP115224
• Coordinates: 4408103..4409107 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F055
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4403103..4414107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP90_RS20965 (PCP90_20955)	-	4404358..4404615 (-)	258	WP_003103170.1	metal-sensing transcriptional repressor	-
PCP90_RS20970 (PCP90_20960)	radC	4404741..4405247 (-)	507	WP_003103172.1	RadC family protein	Machinery gene
PCP90_RS20975 (PCP90_20965)	-	4405618..4406682 (-)	1065	WP_003103173.1	PDDEXK nuclease domain-containing protein	-
PCP90_RS20980 (PCP90_20970)	-	4406679..4407878 (-)	1200	WP_003103175.1	tyrosine-type recombinase/integrase	-
PCP90_RS20985 (PCP90_20975)	rpoS	4408103..4409107 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP90_RS20990 (PCP90_20980)	-	4409212..4410105 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP90_RS20995 (PCP90_20985)	-	4410151..4410786 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP90_RS21000 (PCP90_20990)	surE	4410819..4411568 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP90_RS21005 (PCP90_20995)	truD	4411556..4412623 (-)	1068	WP_023087103.1	tRNA pseudouridine(13) synthase TruD	-
PCP90_RS21010 (PCP90_21000)	ispF	4412620..4413093 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP90_RS21015 (PCP90_21005)	fghA	4413164..4414015 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=696971 PCP90_RS20985 WP_003113871.1 4408103..4409107(-) (rpoS) [Pseudomonas aeruginosa strain F055]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=696971 PCP90_RS20985 WP_003113871.1 4408103..4409107(-) (rpoS) [Pseudomonas aeruginosa strain F055]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653