Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DOM78_RS10920 Genome accession   NZ_AP018446
Coordinates   2127049..2127471 (-) Length   140 a.a.
NCBI ID   WP_002955972.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain P03D0629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2122049..2132471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM78_RS10900 cysE 2122055..2122813 (-) 759 WP_014667432.1 serine O-acetyltransferase -
  DOM78_RS10905 speA 2122827..2124677 (-) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  DOM78_RS10910 ybeY 2124802..2125467 (+) 666 WP_231997565.1 rRNA maturation RNase YbeY -
  DOM78_RS11420 - 2126128..2126370 (+) 243 WP_133246272.1 hypothetical protein -
  DOM78_RS10915 - 2126308..2126949 (-) 642 WP_014667434.1 TetR/AcrR family transcriptional regulator -
  DOM78_RS10920 dprB 2127049..2127471 (-) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  DOM78_RS10925 dprA 2127471..2128256 (-) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  DOM78_RS10930 - 2128293..2129375 (-) 1083 WP_014667624.1 divergent polysaccharide deacetylase family protein -
  DOM78_RS10935 minE 2129376..2129627 (-) 252 WP_014667625.1 cell division topological specificity factor MinE -
  DOM78_RS10940 minD 2129624..2130439 (-) 816 WP_014667436.1 septum site-determining protein MinD -
  DOM78_RS10945 - 2130506..2131057 (-) 552 WP_014667437.1 hypothetical protein -
  DOM78_RS10950 - 2131057..2131971 (-) 915 WP_014667438.1 type II restriction endonuclease -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15456.94 Da        Isoelectric Point: 7.1676

>NTDB_id=69697 DOM78_RS10920 WP_002955972.1 2127049..2127471(-) (dprB) [Helicobacter cinaedi strain P03D0629]
MENKKILACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=69697 DOM78_RS10920 WP_002955972.1 2127049..2127471(-) (dprB) [Helicobacter cinaedi strain P03D0629]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493

Multiple sequence alignment