Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDQ69_RS02325 Genome accession   NZ_CP098548
Coordinates   451125..451790 (+) Length   221 a.a.
NCBI ID   WP_229931479.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9343     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446125..456790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ69_RS02300 (NDQ69_02285) cysT 446412..447239 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  NDQ69_RS02305 (NDQ69_02290) - 447420..447752 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ69_RS02310 (NDQ69_02295) - 448079..448588 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ69_RS02315 (NDQ69_02300) - 448820..449401 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ69_RS02320 (NDQ69_02305) dnaB 449565..450971 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ69_RS02325 (NDQ69_02310) pilH 451125..451790 (+) 666 WP_229931479.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ69_RS02330 (NDQ69_02315) pilV 451822..452433 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDQ69_RS02335 (NDQ69_02320) pilJ 452430..453380 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NDQ69_RS02340 (NDQ69_02325) pilK 453359..453970 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ69_RS02345 (NDQ69_02330) pilL 453972..454445 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ69_RS02350 (NDQ69_02335) - 454515..454823 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ69_RS02355 (NDQ69_02340) - 454820..455530 (-) 711 Protein_462 AzlC family ABC transporter permease -
  NDQ69_RS02360 (NDQ69_02345) dut 455696..456148 (+) 453 WP_003699637.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24708.07 Da        Isoelectric Point: 9.0996

>NTDB_id=696961 NDQ69_RS02325 WP_229931479.1 451125..451790(+) (pilH) [Neisseria gonorrhoeae strain 9343]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRYDFSKKGWGMLAFGDKNGNKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=696961 NDQ69_RS02325 WP_229931479.1 451125..451790(+) (pilH) [Neisseria gonorrhoeae strain 9343]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATATGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.593

100

0.896