Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NDQ65_RS00500 Genome accession   NZ_CP098538
Coordinates   107723..108322 (-) Length   199 a.a.
NCBI ID   WP_010356666.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain ATCC 49226     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102723..113322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ65_RS00480 (NDQ65_00480) - 102892..103404 (-) 513 WP_003687349.1 shikimate kinase -
  NDQ65_RS00485 (NDQ65_00485) pilQ 104298..106493 (-) 2196 WP_010356660.1 type IV pilus secretin PilQ Machinery gene
  NDQ65_RS00490 (NDQ65_00490) pilP 106512..107057 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  NDQ65_RS00495 (NDQ65_00495) - 107075..107722 (-) 648 WP_010356664.1 type 4a pilus biogenesis protein PilO -
  NDQ65_RS00500 (NDQ65_00500) pilN 107723..108322 (-) 600 WP_010356666.1 PilN domain-containing protein Machinery gene
  NDQ65_RS00505 (NDQ65_00505) pilM 108325..109440 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  NDQ65_RS00510 (NDQ65_00510) - 109592..111988 (+) 2397 WP_025455928.1 penicillin-binding protein 1A -
  NDQ65_RS00515 (NDQ65_00515) yihA 112108..112737 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22255.59 Da        Isoelectric Point: 9.7317

>NTDB_id=696764 NDQ65_RS00500 WP_010356666.1 107723..108322(-) (pilN) [Neisseria gonorrhoeae strain ATCC 49226]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=696764 NDQ65_RS00500 WP_010356666.1 107723..108322(-) (pilN) [Neisseria gonorrhoeae strain ATCC 49226]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.99

100

0.98