Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HXS59_RS17250 Genome accession   NZ_AP023224
Coordinates   3570362..3570967 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YJ1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3565362..3575967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS59_RS17230 aes 3565399..3566358 (+) 960 WP_000801846.1 acetyl esterase -
  HXS59_RS17235 hemH 3566355..3567317 (-) 963 WP_001250088.1 ferrochelatase -
  HXS59_RS17240 adk 3567553..3568197 (-) 645 WP_001220233.1 adenylate kinase -
  HXS59_RS17245 htpG 3568378..3570252 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  HXS59_RS17250 recR 3570362..3570967 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HXS59_RS17255 ybaB 3570967..3571296 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HXS59_RS17260 dnaX 3571349..3573280 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HXS59_RS17265 apt 3573409..3573960 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HXS59_RS17270 ybaN 3574113..3574490 (-) 378 WP_001188905.1 DUF454 family protein -
  HXS59_RS17275 priC 3574560..3575087 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HXS59_RS17280 rsmS 3575101..3575262 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HXS59_RS24335 - 3575315..3575413 (-) 99 Protein_3419 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=69664 HXS59_RS17250 WP_001195025.1 3570362..3570967(-) (recR) [Escherichia coli strain YJ1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=69664 HXS59_RS17250 WP_001195025.1 3570362..3570967(-) (recR) [Escherichia coli strain YJ1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment