Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NDQ71_RS09810 Genome accession   NZ_CP098523
Coordinates   2062622..2064118 (+) Length   498 a.a.
NCBI ID   WP_064667818.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. KG3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057622..2069118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ71_RS09780 (NDQ71_09765) - 2058241..2059212 (+) 972 WP_301561530.1 calcium/sodium antiporter -
  NDQ71_RS09785 (NDQ71_09770) - 2059237..2060208 (+) 972 WP_064667823.1 KpsF/GutQ family sugar-phosphate isomerase -
  NDQ71_RS09790 (NDQ71_09775) kdsC 2060208..2060759 (+) 552 WP_064667822.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NDQ71_RS09795 (NDQ71_09780) lptC 2060756..2061310 (+) 555 WP_064667821.1 LPS export ABC transporter periplasmic protein LptC -
  NDQ71_RS09800 (NDQ71_09785) lptA 2061300..2061833 (+) 534 WP_064667820.1 lipopolysaccharide transport periplasmic protein LptA -
  NDQ71_RS09805 (NDQ71_09790) lptB 2061830..2062555 (+) 726 WP_064667819.1 LPS export ABC transporter ATP-binding protein -
  NDQ71_RS09810 (NDQ71_09795) rpoN/rpoN1 2062622..2064118 (+) 1497 WP_064667818.1 RNA polymerase factor sigma-54 Machinery gene
  NDQ71_RS09815 (NDQ71_09800) hpf 2064147..2064434 (+) 288 WP_016710074.1 ribosome hibernation promoting factor -
  NDQ71_RS09820 (NDQ71_09805) ptsN 2064439..2064891 (+) 453 WP_064667817.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NDQ71_RS09825 (NDQ71_09810) rapZ 2064912..2065754 (+) 843 WP_064667816.1 RNase adapter RapZ -
  NDQ71_RS09830 (NDQ71_09815) - 2065783..2066055 (+) 273 WP_064667815.1 HPr family phosphocarrier protein -
  NDQ71_RS09835 (NDQ71_09820) mgtE 2066174..2067532 (+) 1359 WP_192542397.1 magnesium transporter -
  NDQ71_RS09840 (NDQ71_09825) - 2068150..2068308 (-) 159 WP_064667813.1 YqaE/Pmp3 family membrane protein -
  NDQ71_RS09845 (NDQ71_09830) - 2068373..2068936 (-) 564 WP_064667812.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 56193.55 Da        Isoelectric Point: 4.4855

>NTDB_id=696606 NDQ71_RS09810 WP_064667818.1 2062622..2064118(+) (rpoN/rpoN1) [Pseudoalteromonas sp. KG3]
MRQSLQLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLELEEHEYSEDAAGKNEQKQDNDDLTVSASADDK
PSEYEQESSEALSKETLSDEMAMDVTWDEYMSAAPNSSSGPMPEDESIYQGASTETLHEYLMWQLQLTPFSPTDEAIAIA
IVEAIDDSGILTLSCEDLVESLNQGNSEEEIELDEVQAVLKRIQLFDPVGIAARSLQECLCIQLNQFDPATPWIAETKMI
LTDHIDLLASRDYRTLMKKTKLKEEDLKEVMTLIHSLNPKPADTIVREESEYVIPDVSVKKIKGRWVVELNPDSMPKIRV
NSQYAAMSRSVKSSTDSQFIRSHLQEAKWFIKSLESRNDTLLKVTNCIVKQQQGFFEHGPEAMRPMVLNDVAEMVEMHES
TISRVTTQKYMHTPRGIFELKYFFSSHVSTENGGECSSTAIRALIRKLISAENSAKPLSDSKIADILAEQGIKVARRTIA
KYRESLAIPPSNQRKSLI

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=696606 NDQ71_RS09810 WP_064667818.1 2062622..2064118(+) (rpoN/rpoN1) [Pseudoalteromonas sp. KG3]
ATGAGGCAATCACTCCAGCTGCGCATGGGCCAGCAACTTACAATGACACCGCAACTGCAACAAGCTATTCGCTTATTGCA
GCTCAGTACATTGGATCTCCAGCAAGAAATTCAAGAAGCGCTAGATAGCAATCCGTTGTTAGAACTAGAAGAACATGAAT
ATTCAGAAGATGCTGCTGGCAAAAACGAACAAAAACAAGACAACGATGACTTAACTGTCAGTGCCTCAGCGGACGACAAG
CCTAGCGAATACGAACAAGAAAGCAGCGAAGCATTAAGTAAAGAAACCCTCAGTGACGAAATGGCAATGGACGTCACTTG
GGATGAATACATGAGTGCTGCGCCTAACAGTTCATCGGGGCCAATGCCCGAAGATGAATCTATTTATCAAGGCGCCTCAA
CAGAGACCTTGCATGAATATTTAATGTGGCAGTTACAGCTAACGCCCTTTAGCCCAACCGATGAAGCAATCGCCATTGCC
ATTGTTGAGGCCATTGATGACTCTGGTATTTTAACACTCAGCTGTGAAGACCTTGTAGAGAGCTTAAATCAAGGCAACAG
CGAAGAAGAAATCGAACTGGACGAAGTGCAAGCGGTTTTAAAGCGCATTCAATTATTTGATCCTGTTGGCATTGCCGCCC
GTAGTTTACAAGAGTGTTTATGTATTCAATTAAATCAATTTGATCCTGCAACTCCTTGGATTGCAGAGACAAAAATGATT
TTAACGGATCATATCGATTTATTAGCTAGTCGCGACTATCGCACTTTGATGAAAAAGACTAAGCTTAAAGAAGAAGATTT
AAAAGAAGTCATGACACTGATCCACAGTCTCAACCCAAAGCCTGCGGATACCATAGTACGGGAAGAGTCAGAGTACGTTA
TTCCTGATGTATCAGTGAAAAAAATTAAAGGCCGCTGGGTGGTTGAACTTAATCCAGACAGCATGCCAAAAATTAGAGTG
AACAGCCAATATGCGGCCATGTCACGCTCCGTTAAATCGAGCACTGACAGCCAATTTATTCGTTCGCATCTGCAAGAAGC
TAAATGGTTTATAAAAAGCCTAGAAAGTCGTAACGACACATTACTCAAAGTAACCAACTGCATTGTTAAACAGCAGCAAG
GATTCTTTGAACATGGCCCTGAAGCTATGCGCCCGATGGTGCTAAATGACGTTGCTGAAATGGTTGAAATGCATGAGTCG
ACAATTTCTCGCGTAACAACCCAAAAATACATGCATACTCCACGGGGTATTTTTGAGCTAAAATATTTTTTCTCAAGTCA
TGTAAGCACTGAGAACGGCGGTGAATGTTCGTCTACCGCAATTCGCGCATTGATCAGAAAACTGATCAGCGCAGAAAACT
CAGCGAAACCATTGAGTGATAGTAAAATTGCAGATATATTGGCAGAGCAAGGTATCAAAGTAGCTAGACGGACTATTGCA
AAATACCGCGAGTCACTGGCTATTCCACCGTCAAATCAAAGAAAGAGTTTGATTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-324)

Sigma-54, DNA binding domain (Sigma54_DBD)

(338-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.693

100

0.482