Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NDN18_RS18050 Genome accession   NZ_CP098521
Coordinates   3761233..3761559 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Cl107     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3756233..3766559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS18030 (NDN18_18030) - 3756334..3756963 (-) 630 WP_000219964.1 FHA domain-containing protein -
  NDN18_RS18035 (NDN18_18035) gspD 3757004..3759280 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  NDN18_RS18040 (NDN18_18040) - 3759322..3760158 (-) 837 WP_000870031.1 type II secretion system protein N -
  NDN18_RS18045 (NDN18_18045) gspN 3760158..3760901 (-) 744 WP_000730343.1 type II secretion system protein N -
  NDN18_RS18050 (NDN18_18050) hns 3761233..3761559 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  NDN18_RS18055 (NDN18_18055) - 3761754..3762194 (-) 441 WP_000661569.1 thioesterase family protein -
  NDN18_RS18060 (NDN18_18060) - 3762202..3763395 (-) 1194 WP_000681773.1 hypothetical protein -
  NDN18_RS18065 (NDN18_18065) - 3763405..3764244 (-) 840 WP_001230196.1 hypothetical protein -
  NDN18_RS18070 (NDN18_18070) - 3764253..3765020 (-) 768 WP_000897425.1 uroporphyrinogen-III synthase -
  NDN18_RS18075 (NDN18_18075) hemC 3765025..3765942 (-) 918 WP_031946090.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=696588 NDN18_RS18050 WP_000801427.1 3761233..3761559(-) (hns) [Acinetobacter baumannii strain Cl107]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=696588 NDN18_RS18050 WP_000801427.1 3761233..3761559(-) (hns) [Acinetobacter baumannii strain Cl107]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1