Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NDN18_RS10750 Genome accession   NZ_CP098521
Coordinates   2244972..2245352 (-) Length   126 a.a.
NCBI ID   WP_000836910.1    Uniprot ID   A0AAQ1AB09
Organism   Acinetobacter baumannii strain Cl107     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2239972..2250352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS10720 (NDN18_10715) tadA 2240091..2240594 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  NDN18_RS10725 (NDN18_10720) - 2240601..2241725 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  NDN18_RS10730 (NDN18_10725) ung 2241722..2242435 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  NDN18_RS10735 (NDN18_10730) - 2242486..2243082 (-) 597 WP_000908451.1 6-carboxytetrahydropterin synthase -
  NDN18_RS10740 (NDN18_10735) gspK 2243312..2244271 (-) 960 WP_000301481.1 type II secretion system minor pseudopilin GspK -
  NDN18_RS10745 (NDN18_10740) xcpW 2244271..2244972 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NDN18_RS10750 (NDN18_10745) xcpV 2244972..2245352 (-) 381 WP_000836910.1 type II secretion system minor pseudopilin GspI Machinery gene
  NDN18_RS10755 (NDN18_10750) - 2245342..2245896 (-) 555 WP_000841379.1 type II secretion system protein -
  NDN18_RS10760 (NDN18_10755) - 2245906..2246514 (-) 609 WP_243787836.1 TetR/AcrR family transcriptional regulator -
  NDN18_RS10765 (NDN18_10760) - 2246552..2247325 (-) 774 WP_000497298.1 TatD family hydrolase -
  NDN18_RS10770 (NDN18_10765) - 2247343..2247684 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  NDN18_RS10775 (NDN18_10770) - 2247696..2248676 (-) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  NDN18_RS10780 (NDN18_10775) kdsB 2248688..2249449 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=696571 NDN18_RS10750 WP_000836910.1 2244972..2245352(-) (xcpV) [Acinetobacter baumannii strain Cl107]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=696571 NDN18_RS10750 WP_000836910.1 2244972..2245352(-) (xcpV) [Acinetobacter baumannii strain Cl107]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992