Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NBT05_RS06705 Genome accession   NZ_CP098511
Coordinates   1566744..1568108 (-) Length   454 a.a.
NCBI ID   WP_265772722.1    Uniprot ID   -
Organism   Aquimarina sp. ERC-38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1561744..1573108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBT05_RS06685 (NBT05_06675) - 1563111..1563872 (+) 762 WP_265772718.1 exodeoxyribonuclease III -
  NBT05_RS06690 (NBT05_06680) - 1563927..1564331 (-) 405 WP_265772719.1 hypothetical protein -
  NBT05_RS06695 (NBT05_06685) - 1564704..1564913 (-) 210 WP_265772720.1 hypothetical protein -
  NBT05_RS06700 (NBT05_06690) - 1565688..1566719 (+) 1032 WP_265772721.1 aldo/keto reductase -
  NBT05_RS06705 (NBT05_06695) radA 1566744..1568108 (-) 1365 WP_265772722.1 DNA repair protein RadA Machinery gene
  NBT05_RS06710 (NBT05_06700) - 1568141..1569286 (-) 1146 WP_265772723.1 alpha/beta hydrolase -
  NBT05_RS06715 (NBT05_06705) - 1569332..1570252 (-) 921 WP_265772724.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  NBT05_RS06720 (NBT05_06710) panD 1570302..1570652 (-) 351 WP_265772725.1 aspartate 1-decarboxylase -
  NBT05_RS06725 (NBT05_06715) panC 1570672..1571520 (-) 849 WP_265772726.1 pantoate--beta-alanine ligase -
  NBT05_RS06730 (NBT05_06720) - 1571628..1572437 (+) 810 WP_265772727.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50158.78 Da        Isoelectric Point: 7.3045

>NTDB_id=696538 NBT05_RS06705 WP_265772722.1 1566744..1568108(-) (radA) [Aquimarina sp. ERC-38]
MAKVKTVFYCQNCGAQYAKWQGQCTACKEWNTIAEEVVQKPDQKDWKTGSKQHQPKVVLPLKVSEIDTSKEARYKTYDTE
LNNVLGGGIVPGSLILLGGEPGIGKSTLLLQISLNLPYRTLYVSGEESQKQIKMRAERITGKTDNCFILTETKTQNIFKQ
VEKVDPDIVVIDSIQTLHSDYVESSPGSISQIRECTSELIKFAKESSIPVLLIGHITKDGAIAGPKILEHMVDTVLQFEG
DRNHVYRILRANKNRFGSTAELGIYEMLGSGLREVSNPSEILISKKEEELSGTAIATTLEGLRPLLIEIQALVSTAVYGT
PQRSATGYNVKRLNMILAVLEKRAGFRLGAKDVFLNITGGIHIDDTAIDLAVVAAILSSNEDIPIPKDYCFAAEVGLAGE
IRPVTRIDQRIQESDKLGFSTIFISKYSKVSKENYIIKIQKVAKIEDVVAFLFS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=696538 NBT05_RS06705 WP_265772722.1 1566744..1568108(-) (radA) [Aquimarina sp. ERC-38]
ATGGCTAAAGTAAAAACCGTTTTTTATTGTCAAAACTGCGGAGCACAATATGCAAAATGGCAAGGTCAGTGCACCGCTTG
TAAAGAATGGAATACCATAGCAGAAGAGGTCGTTCAGAAACCGGATCAAAAAGATTGGAAAACCGGGTCAAAACAACATC
AACCTAAAGTAGTTCTTCCGCTAAAGGTTTCTGAGATCGATACGAGTAAAGAGGCTCGCTATAAAACCTATGATACGGAA
CTGAATAATGTGCTGGGTGGAGGTATTGTACCCGGATCGTTAATATTGTTAGGTGGAGAGCCAGGCATTGGAAAAAGTAC
ATTGCTCTTACAAATTAGTCTTAACCTGCCCTATCGCACATTATACGTATCCGGGGAAGAAAGTCAGAAGCAAATTAAAA
TGCGTGCCGAACGTATTACCGGTAAAACAGACAACTGCTTTATCCTAACGGAAACTAAGACACAAAATATCTTTAAACAG
GTTGAAAAGGTAGATCCGGATATTGTCGTGATTGATTCAATTCAGACTTTACATAGCGATTATGTAGAAAGTAGCCCGGG
TAGCATTTCTCAGATTAGGGAATGTACCTCAGAGCTGATTAAATTTGCTAAGGAATCATCAATCCCGGTGTTACTCATTG
GTCATATTACAAAAGACGGTGCTATTGCCGGTCCTAAAATTCTGGAACATATGGTAGATACGGTCTTACAATTTGAAGGA
GACCGTAACCATGTCTATCGTATTTTAAGAGCAAATAAGAACAGATTCGGATCAACGGCAGAATTAGGTATTTACGAGAT
GTTGGGTAGCGGATTAAGGGAAGTTAGCAATCCTAGCGAAATCTTAATTTCAAAAAAAGAAGAAGAACTAAGTGGTACTG
CGATTGCAACAACTTTAGAAGGACTCCGCCCCTTATTAATTGAAATACAGGCTTTAGTGAGTACCGCCGTATACGGCACC
CCACAGCGAAGTGCTACCGGGTATAACGTCAAAAGATTAAATATGATCCTGGCAGTGTTAGAAAAAAGGGCAGGTTTTCG
ATTAGGGGCCAAAGATGTTTTTCTAAATATTACAGGAGGCATTCATATTGATGATACCGCCATTGACCTTGCTGTAGTAG
CAGCTATTTTATCATCAAATGAAGACATTCCTATTCCTAAAGACTATTGTTTTGCAGCCGAAGTCGGGTTGGCTGGTGAA
ATAAGACCAGTGACCCGTATTGATCAGCGTATCCAGGAATCTGACAAACTAGGTTTTTCTACTATTTTCATTTCTAAGTA
CAGTAAAGTAAGTAAAGAAAACTATATTATTAAAATTCAAAAAGTAGCAAAAATAGAAGATGTGGTTGCTTTTCTATTTA
GTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(334-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.732

100

0.487
  radA Streptococcus pneumoniae Rx1

47.732

100

0.487
  radA Streptococcus pneumoniae D39

47.732

100

0.487
  radA Streptococcus pneumoniae TIGR4

47.732

100

0.487
  radA Streptococcus mitis NCTC 12261

47.732

100

0.487
  radA Streptococcus mitis SK321

49.423

95.374

0.471
  radA Bacillus subtilis subsp. subtilis str. 168

49.883

94.053

0.469