Detailed information NTG0696457

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP54_RS19270
• Genome accession: NZ_CP115219
• Coordinates: 4129353..4130357 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F060
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4124353..4135357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP54_RS19255 (PCP54_19245)	-	4124837..4125844 (+)	1008	WP_003098486.1	TolB family protein	-
PCP54_RS19260 (PCP54_19250)	mutS	4125970..4128537 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PCP54_RS19265 (PCP54_19255)	fdxA	4128604..4128927 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP54_RS19270 (PCP54_19260)	rpoS	4129353..4130357 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP54_RS19275 (PCP54_19265)	-	4130462..4131355 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP54_RS19280 (PCP54_19270)	-	4131401..4132036 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP54_RS19285 (PCP54_19275)	surE	4132069..4132818 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP54_RS19290 (PCP54_19280)	truD	4132806..4133873 (-)	1068	WP_031687102.1	tRNA pseudouridine(13) synthase TruD	-
PCP54_RS19295 (PCP54_19285)	ispF	4133870..4134343 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP54_RS19300 (PCP54_19290)	fghA	4134414..4135265 (-)	852	WP_003122149.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=696457 PCP54_RS19270 WP_003113871.1 4129353..4130357(-) (rpoS) [Pseudomonas aeruginosa strain F060]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=696457 PCP54_RS19270 WP_003113871.1 4129353..4130357(-) (rpoS) [Pseudomonas aeruginosa strain F060]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653