Detailed information NTG0696335

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP46_RS20580
• Genome accession: NZ_CP115218
• Coordinates: 3770350..3771354 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F061
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3765350..3776354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP46_RS20555 (PCP46_20545)	-	3765498..3765620 (+)	123	WP_257011608.1	hypothetical protein	-
PCP46_RS20560 (PCP46_20550)	-	3765701..3765910 (+)	210	WP_071538228.1	DUF4224 domain-containing protein	-
PCP46_RS20565 (PCP46_20555)	-	3765920..3766894 (+)	975	WP_031690972.1	tyrosine-type recombinase/integrase	-
PCP46_RS20570 (PCP46_20560)	mutS	3766954..3769533 (+)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
PCP46_RS20575 (PCP46_20565)	fdxA	3769600..3769923 (+)	324	WP_003119354.1	ferredoxin FdxA	-
PCP46_RS20580 (PCP46_20570)	rpoS	3770350..3771354 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP46_RS20585 (PCP46_20575)	-	3771459..3772352 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP46_RS20590 (PCP46_20580)	-	3772398..3773033 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP46_RS20595 (PCP46_20585)	surE	3773066..3773815 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP46_RS20600 (PCP46_20590)	truD	3773803..3774870 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PCP46_RS20605 (PCP46_20595)	ispF	3774867..3775340 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP46_RS20610 (PCP46_20600)	fghA	3775411..3776262 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=696335 PCP46_RS20580 WP_003113871.1 3770350..3771354(-) (rpoS) [Pseudomonas aeruginosa strain F061]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=696335 PCP46_RS20580 WP_003113871.1 3770350..3771354(-) (rpoS) [Pseudomonas aeruginosa strain F061]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653