Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NDK36_RS14290 Genome accession   NZ_CP098491
Coordinates   2631720..2632466 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2626720..2637466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS14265 (NDK36_14265) mreC 2627126..2627998 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NDK36_RS14270 (NDK36_14270) mreB 2628029..2629042 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NDK36_RS14275 (NDK36_14275) radC 2629134..2629829 (-) 696 WP_014480455.1 DNA repair protein RadC -
  NDK36_RS14280 (NDK36_14280) maf 2629866..2630435 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  NDK36_RS14285 (NDK36_14285) spoIIB 2630588..2631586 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  NDK36_RS14290 (NDK36_14290) comC 2631720..2632466 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  NDK36_RS14295 (NDK36_14295) folC 2632606..2633898 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NDK36_RS14300 (NDK36_14300) valS 2633958..2636600 (-) 2643 WP_014480461.1 valine--tRNA ligase -
  NDK36_RS14305 (NDK36_14305) - 2637048..2637239 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=696308 NDK36_RS14290 WP_072592551.1 2631720..2632466(-) (comC) [Bacillus subtilis strain NB205]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=696308 NDK36_RS14290 WP_072592551.1 2631720..2632466(-) (comC) [Bacillus subtilis strain NB205]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996