Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NDK36_RS08055 Genome accession   NZ_CP098491
Coordinates   1520053..1520331 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain NB205     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515053..1525331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS08035 (NDK36_08035) panEB 1516241..1517152 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  NDK36_RS08040 (NDK36_08040) ampS 1517186..1518418 (-) 1233 WP_003232341.1 aminopeptidase -
  NDK36_RS08045 (NDK36_08045) ykpC 1518527..1518661 (-) 135 WP_003238865.1 protein YkpC -
  NDK36_RS08050 (NDK36_08050) mreBH 1518762..1519769 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NDK36_RS08055 (NDK36_08055) abrB 1520053..1520331 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NDK36_RS08060 (NDK36_08060) kinC 1520521..1521804 (+) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  NDK36_RS08065 (NDK36_08065) ykqA 1521820..1522653 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  NDK36_RS08070 (NDK36_08070) ktrC 1522716..1523381 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NDK36_RS08075 (NDK36_08075) ade 1523536..1525269 (+) 1734 WP_014479688.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=696283 NDK36_RS08055 WP_003244728.1 1520053..1520331(+) (abrB) [Bacillus subtilis strain NB205]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=696283 NDK36_RS08055 WP_003244728.1 1520053..1520331(+) (abrB) [Bacillus subtilis strain NB205]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576