Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NDK36_RS02135 Genome accession   NZ_CP098491
Coordinates   419964..421112 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain NB205     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 414964..426112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS02115 (NDK36_02115) yclH 415341..416021 (-) 681 WP_014478826.1 ABC transporter ATP-binding protein -
  NDK36_RS02120 (NDK36_02120) yclI 416037..417497 (-) 1461 WP_014478827.1 ABC transporter permease -
  NDK36_RS02125 (NDK36_02125) yclJ 417710..418393 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  NDK36_RS02130 (NDK36_02130) yclK 418380..419801 (+) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  NDK36_RS02135 (NDK36_02135) rapC 419964..421112 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  NDK36_RS02140 (NDK36_02140) phrC 421096..421218 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  NDK36_RS02145 (NDK36_02145) yczM 421317..421406 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  NDK36_RS02150 (NDK36_02150) yczN 421488..421601 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  NDK36_RS02155 (NDK36_02155) thrD 421754..423118 (-) 1365 WP_014478832.1 aspartate kinase -
  NDK36_RS02160 (NDK36_02160) ceuB 423509..424459 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  NDK36_RS02165 (NDK36_02165) yclO 424452..425399 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=696261 NDK36_RS02135 WP_014475800.1 419964..421112(+) (rapC) [Bacillus subtilis strain NB205]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=696261 NDK36_RS02135 WP_014475800.1 419964..421112(+) (rapC) [Bacillus subtilis strain NB205]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568